Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183626g00001 TCGCAGCAGTTGTTTGAGAGGGATGCGCAGATAATAACGCCGGAGGCGCTGGAGGGCGTGAAGGCGGCGATTGCGAGCAGCGAGGCGGAGAACAAGGCGGAGGCGAAGAAGAAAGCAGTTCCTCGAAAAGCTGCTGGTCAAACGTGGGAGGATCCTATTCTTGCTGAGTGGCCCGAAGATGATTATCGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGATGATGTTCTTACAAAAGCATTTTCACGTTTTCCTTCCTTTAACATGGCACGGGTCGTCAGAGATAAACGGACTGGGAAAACAAAAGGCTATGGTTTTGTAAGCTTTGCCAGTCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATAAAATTGCGCAAGAGTAAGTGGAAGGAGAGGACAGATTTTGAGGCCCTAGAAAAACAGAAGAGCCAAACTCATAAGAAACCGAAGCTTCCCAGGAAGGGTGTTCTTCACAAGTGA 513 0.4756 SQQLFERDAQIITPEALEGVKAAIASSEAENKAEAKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLTKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFASPSDLAAALKEMNGKYVGNRPIKLRKSKWKERTDFEALEKQKSQTHKKPKLPRKGVLHK 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183626g00001 170 FunFam RNA-binding protein 42 1 147 - -
Stsc183626g00001 170 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 151 - -
Stsc183626g00001 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 134 IPR000504 GO:0003723
Stsc183626g00001 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Stsc183626g00001 170 CDD RRM_RBM42 56 138 IPR034215 -
Stsc183626g00001 170 SUPERFAMILY RNA-binding domain, RBD 46 142 IPR035979 GO:0003676
Stsc183626g00001 170 SMART rrm1_1 63 136 IPR000504 GO:0003723
Stsc183626g00001 170 Gene3D - 14 161 IPR012677 -
Stsc183626g00001 170 MobiDBLite consensus disorder prediction 146 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183626g00001 Stsc-Chr183626 2804 5473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183626g00001 60 155 Eukaryotic Initiation Factors Gene Family AT2G23350 35.417 7.34e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183626g00001 K25079 - gmx:100807693 302.367