Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183552g00003 AGAGTGAAGTGTCAAAGAAGTGGTGGCCTAAAATACACAATGAGTGGAAGTTCTCACTTCTATCAAGTTCTGGTAACCAATGTAGGACTTGATGGTGAGGTGGTTGCTATGAAGGTGAAGGGATCAAGAACAGGGTGGATACCAATGGCGAGGAACTGGGGCCAAAACTGGCATTGCAATGTCAACCTTCAGCGACAACCTTTGTCGTTTGAGGTAACTGTCAGCAGTGGAAGAACACTCACATCTTACAATGTTGCCCCGGCGAATTGGCAGTTTGGACAGACATTTGAGGGAAAACAGTTTGCAGAATGA 312 0.4583 RVKCQRSGGLKYTMSGSSHFYQVLVTNVGLDGEVVAMKVKGSRTGWIPMARNWGQNWHCNVNLQRQPLSFEVTVSSGRTLTSYNVAPANWQFGQTFEGKQFAE 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183552g00003 103 PANTHER EXPANSIN-A15 1 101 IPR002963 GO:0009664
Stsc183552g00003 103 FunFam Expansin 9 101 - -
Stsc183552g00003 103 SUPERFAMILY PHL pollen allergen 6 98 IPR036749 -
Stsc183552g00003 103 Pfam Expansin C-terminal domain 12 87 IPR007117 -
Stsc183552g00003 103 Gene3D - 10 101 IPR036749 -
Stsc183552g00003 103 PRINTS Expansin/Lol pI family signature 84 98 IPR007118 GO:0005576
Stsc183552g00003 103 PRINTS Expansin/Lol pI family signature 46 60 IPR007118 GO:0005576
Stsc183552g00003 103 PRINTS Expansin signature 55 76 IPR002963 GO:0009664
Stsc183552g00003 103 PRINTS Expansin signature 8 20 IPR002963 GO:0009664
Stsc183552g00003 103 PRINTS Expansin signature 20 41 IPR002963 GO:0009664
Stsc183552g00003 103 PRINTS Expansin signature 84 100 IPR002963 GO:0009664
Stsc183552g00003 103 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 19 98 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183552g00003 Stsc-Chr183552 7194 7751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183552g00003 1 101 Expansin Gene Family AT4G38210 66.337 2.33e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183552g00003 - - ahf:112789777 211.846