Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183534g00001 ATGAAAACTCTGCAAGTGTTCAAGGCATCACCCTCTTCCTTGGGATCACAAAACTTGTTACCTTCTTCTTCCACATCTCTTCCTCTAACCTTCTTTGACATACTATGGCTAAGGTTACCACCTGTTCAACGAGTTTTCTTCTATGAATTCCCACACCAACCCTCACTCTTCTATGATGCCATTCTTCCTAAACTCAAACACTCTCTTTCTCTTTCACTTTCTTACTATTTCCCTCTTGCTGGAACCCTCTCTTGGCCTCATCATTCCAACAAACCCATCATCACTTACAACCTCGGTGACACTCTCTCACTTACTGTAGCTGAATCTGATGCTGATTTCAACCATCTTTCAGGTTCTGACTTTTCTGAAGCCTCAAAGCTTCACCATCTTGTTCCTGAATTGATCATTTCCGATGATCAAGCCACTGTCATGGCCTTACAAGTTACCTTTTTTCCAAACCATGGATTCTCCATTGGAGTCACATCACACCATGCTGTTCTTGATGGAAAAACCTCAACATCCTTCATCAAATCTTGGGCTTATCTCTGCAATAAGCTAGGAGATTCATCATCATCATCACCGTGTGATTTGCCTCCTGAATTGAGTCCTTTCTTTGACAGAGAAATTGTGAAAGATCCCAAAGGGCTTGAAGCAAAGTATCTGAGTGATTGGTTAAAGGAAGGTGGATCCAACAACAGAAGCCTCAAGGTTTGGAATCTTCAAGTTCCACAAGATTCAGTAAGGGGTTTGTTCCAATTGTCTAGATCAAACATTGAGAAGCTCAAGAATTTTGTTGCTTCTAAAGGAAGTAGTAATCTCCACTTGTCAAGTTTTGTTGTATCTCTTGCATATGCTTGGGTTTGCAAGGTGAAAGCTGAACAAACTAAGAGCAAGAAAGTTGGTATGGCTATAAATGTTGATTGCAGGGATCGATTAGATCCCCCTCTTCCTCCAACATACTTTGGAAACTGCATTGGTGGAAAATTTGCATTTGCTGAAACAAGAAAGTTCTTGGATGAAGATGATGGTGGAGTAGTTGCTGCTGTGGAATCACTGAGTTCTGTTTTGGAGGCACTGAAGGATGGGGTTCTGAATGAAGCTGAGATTTGGTCATCCATGTTGCACGATGGATTACACAGTGATGAAGATGTTAAGATGATTGGTGCTGCAGGAACACCAAGGTTTGAGGTCTATGGAAGTGATTTTGGGTGGGGAAGACCAAAGAAAGTGGAGATGGTGTCTATTGACAGAACTGGTGCAATTTCTCTCTCAGATAGCAGAGATGGTGATGGTATTCAGCTTGGTTTTGTGTCCAGTAAAGCTTCAATGGAATCATTTGCTTCCATCTTTGCCAAGGGCCTTCTTCTTTGA 1371 0.4179 MKTLQVFKASPSSLGSQNLLPSSSTSLPLTFFDILWLRLPPVQRVFFYEFPHQPSLFYDAILPKLKHSLSLSLSYYFPLAGTLSWPHHSNKPIITYNLGDTLSLTVAESDADFNHLSGSDFSEASKLHHLVPELIISDDQATVMALQVTFFPNHGFSIGVTSHHAVLDGKTSTSFIKSWAYLCNKLGDSSSSSPCDLPPELSPFFDREIVKDPKGLEAKYLSDWLKEGGSNNRSLKVWNLQVPQDSVRGLFQLSRSNIEKLKNFVASKGSSNLHLSSFVVSLAYAWVCKVKAEQTKSKKVGMAINVDCRDRLDPPLPPTYFGNCIGGKFAFAETRKFLDEDDGGVVAAVESLSSVLEALKDGVLNEAEIWSSMLHDGLHSDEDVKMIGAAGTPRFEVYGSDFGWGRPKKVEMVSIDRTGAISLSDSRDGDGIQLGFVSSKASMESFASIFAKGLLL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183534g00001 456 Pfam Transferase family 21 448 - -
Stsc183534g00001 456 SUPERFAMILY CoA-dependent acyltransferases 248 453 - -
Stsc183534g00001 456 Gene3D - 241 455 IPR023213 -
Stsc183534g00001 456 PANTHER - 16 454 - -
Stsc183534g00001 456 Gene3D - 1 234 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183534g00001 Stsc-Chr183534 3530 5618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183534g00001 45 407 Monolignol Biosynthesis Gene Families AT5G48930 26.400 5.53e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183534g00001 - - ahf:112744586 671.003