Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183511g00001 ATGGATTTCCTTTCACTTTCTACAATAATACTGATATCTTTAGCTCTGGTTCTTATCTACAACACATGGAAGATCAACAAATCTGTTGATGAAAGCAATAAGAAGCTTCAAGCACCAGAATTACCAGGATGTTTACCTTTGATTGGTCACCTCCATTTACTAGGAGCCAAAACACCACTTGCAAGAATCTTTGCTTCTTTTGCTGATAAGCATGGTCCTATATTCCGGATCCGTTTAGGAGCATACCCTGCCCTTGTCATTTCCAACAAAGACCCAATCAAAGAGTGCTTCACCACAAACGACGTCGTTTTAGCCTCTCGCCCCAAGTCTAGCCATGGAATTCACCTTGGTTACAACTTTGCAGGGTTTGGATTTGCTCCTTATGGCCCTTATTGGACTAAGTTGAGGAAGCTTGCCATGCTTGAACTTCTCTCGCCGCGCCGCATCGAATCTTTGAGGGAGGTTTATGAATCCGAGATTGATACTTTGATCAATGATTTGTTGTCCTACGTTGGTGGTGATTCCGGTGTTAAGGTTGTCATAAGTGAGTGGTTGGAACGCCTCACTTTCAATATTATCATAAAGATGGTTGCTGGAAAGAGGTACTTTAGCTACTTGAAGGATGCGGACGATGAAGAATCAAACAGAATTGTGAAGCTCATAAAAGATTTCATGCACGTTTCAGGTGAGCTTGTTCCTTCAGATTTGATTCCAATTATTGGATGGGTACCAATAGAAGGGAAAGTGCTTAAGAACATGAAAAGAATTGCAAAGGATTTAGATAAAATTGTGGGAAGTTGGGTTGAAGAGCATGATGTGAAGAGTGATGAGGATCAAAAGAACAAGAAGAGCAACTCATCAAGTGAGAAACAGTATTTCATTGACTTCATGCTATCTGTTATTGAAGATGATCCTGCCTCTGGCCATACCCGGGACAATATCATCAAGGCAAATATTATGAATCTAATGTTGGCTGGATCAGACACAACATCCACCACAATGACATGGATCCTGTCCATGTTATTAACCAACAAACATGCTTTGAAGCGTGCACAAGACGAAATTGACCTTCATGTGGCCAAGGACAAAACGGTAAAAGCATCCGACATAAAGAATCTAGTTTATTTACAAGCCATTTTCAAAGAAACTCTAAGATTATATCCACCGGGACCTCTATTAGTACCTCATGAAGCAAGAGAAGATTGTTACATTCATGGCTATTACGTGCCAAAAGGGACACGTGTCTTTGCTAATGTGTGGAAGCTGCATAGAGATCCAAGCATTTGGTCAGAGCCAGAGAAGTTTTCACCAGAGAGGTTTATTGATGGCAATGGAGAACTCAATGAAGATCACAATTTTGAATACCTTCCTTTTGGATCAGGTAGAAGAGCTTGTCCAGGATCAACATTTGCCATTCAAGTGAGTCTCATAACACTTGCTCGGTTGCTTCAGAAGTTTGATTTGGATGTGGGAACGTGTGAAAGCATTGACTTGAGAGAAGGTTTGGGCATAACCTTACCCAAGTTAACTCCTTTACAAATCACTTTGACCCCAAGAATATAA 1563 0.4082 MDFLSLSTIILISLALVLIYNTWKINKSVDESNKKLQAPELPGCLPLIGHLHLLGAKTPLARIFASFADKHGPIFRIRLGAYPALVISNKDPIKECFTTNDVVLASRPKSSHGIHLGYNFAGFGFAPYGPYWTKLRKLAMLELLSPRRIESLREVYESEIDTLINDLLSYVGGDSGVKVVISEWLERLTFNIIIKMVAGKRYFSYLKDADDEESNRIVKLIKDFMHVSGELVPSDLIPIIGWVPIEGKVLKNMKRIAKDLDKIVGSWVEEHDVKSDEDQKNKKSNSSSEKQYFIDFMLSVIEDDPASGHTRDNIIKANIMNLMLAGSDTTSTTMTWILSMLLTNKHALKRAQDEIDLHVAKDKTVKASDIKNLVYLQAIFKETLRLYPPGPLLVPHEAREDCYIHGYYVPKGTRVFANVWKLHRDPSIWSEPEKFSPERFIDGNGELNEDHNFEYLPFGSGRRACPGSTFAIQVSLITLARLLQKFDLDVGTCESIDLREGLGITLPKLTPLQITLTPRI 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183511g00001 520 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 PRINTS E-class P450 group I signature 418 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 PRINTS E-class P450 group I signature 377 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 PRINTS E-class P450 group I signature 188 206 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 PANTHER CYTOCHROME P450 82C3-RELATED 14 519 - -
Stsc183511g00001 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Stsc183511g00001 520 Pfam Cytochrome P450 39 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 Gene3D Cytochrome P450 28 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc183511g00001 520 CDD CYP82 72 519 - -
Stsc183511g00001 520 FunFam Cytochrome P450 82C4 28 517 - -
Stsc183511g00001 520 SUPERFAMILY Cytochrome P450 42 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183511g00001 Stsc-Chr183511 2416 4703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183511g00001 38 520 Cytochrome P450 AT4G31940 46.559 1.32e-153 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183511g00001 - - gmx:100790675 754.592