Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183442g00001 ATGATGTTGGTGGCATTCTTGTATCAAGCTCATAGGCGAAGGGAGAATCAGATCTGCGGTACCAACAACACCTTCAAAGATTCGAAGATTGTGGTGGTTCCAGAGTTTCTGGAGAATCGTAGCAATAACACTAACTCGTCTTCTGATCTCAGAAGCATCCAAAACTATGACGATGCTCTGAACAAAGGCTACTCCACTCTCTCAGTTGAGAAACCCGAACAAGATATCATTGTCTCCAAAAATGGCATGTTCTCCTCCGGCTTCTTCAAAGTCGGTGATAATGCCTTCTCCTTTGGGATATGGTTCACCACCACAAGGCCAGCTTCCCAAACCACCGTAGTTTGGACCGCAAATCGCGACCAACCTGTCAACGGAAAGCGCTCAACGATCTCCCTCTCGCACTCCGGCAATCTTGCTCTGCTAGATGCCGGCCAGTTCCAAACATGGTCTTCCGAAACGGAGTCATTTCTTCCAACTCAATTACGTCTCTCAGACGACGGGAATCTTGTTCTAGAAGATTCCGAAGGAGATATTCTCTGGCAAAGTTTTGATTTCCCCACGGACACTCTACTTCCCGGACAGTTTCTCACCAGAAGCACACAGCTAGTTTCTTCAAGAACTGAGAGTAACCGCTCCTCTGGCTTCTACAAGTTGTCATTTAACGATGACAACGTTCTTAGCCTTCTTTACGACGGCCCTGACGTGTCAAGCAGTTATTGGCCTCCTCCTTGGGAATCAAGCTGGCAAGCTGGAAGGTTTACTTACAATAGTAGCAGAATTGCAGTGCTTGATTCTCTTGGGTGTTTCACTTCTTCGGATGAATATACTGTGAGAACTTCTGATTACGGTGCGGTGCTTCCTAGAAGATTGACGCTTGATCATGATGGAAACCTTCGAGTTTACAGTCAAGATCTAGCATCTGAAAGATGGTATGCTTCATGGCAAGCGATTCTTGATGGTTGTAGCATTCATGGTGTTTGTGGTGCTAATAGTGTTTGCAGTTTTGATCATAGAAAGGGAAGGAAGTGTTCTTGTGTTCCTGGTTACAAAGTGAAGAATCAAAGTGATTGGTCTTATGGTTGTGAATCCATGTTTGCTGCTACTACTTGTAATGAAAGTGAGTTTACTTTCTTGGAAATGAACCATGCTGAGTTTTATGGCTATGACAAGAATTACACGCCCAATTCTACCTTCACCGGTTGCGAAACTTTGTGCTCGAATGACTGCGAATGCAAAGGGTTTCAGTATTCATACGACGAAGCTAGTGGCTGCTTCAAGTGCTACACGAAAACACAGTTGCTCAACGGAGAAAACTCTCCGAGAGTGGCCGGAATTGTAACCTACTTGAAAGTGTTCAAAACTAAAAGCTTCCCTGCCATGTATGGAGAATTTTTCATCAGAGACAGTGTTTGTTCAGTGGAAATTCCTAGAGAGTATTTAAAGAAACATGTAAGCCGTTTCTTGATCTTCTTTTTGTGGTTTTCTGCTGCAATTGGAGTTCTCGAAATCGCTTGCATTTTCATTGTTTATCTCTTAATCAAGAGCCACCGCGGTTCTCGCATAGATCAACATGGATATCAGCTTGCAACAGTGGGATTCAGAAAATTTAGTTATTCTGAGCTAAAGAAGGCAACAAAAGGGTTCAGCCAAGAGATTGGAAGGGGTGCAGGAGGCACTGTGTACAAAGCTCTATTGTCAGATCAAGGAATTGCTGCTGTAAAGAAACTCAATTATGCTAAGCAAGGAGAAAGTGAGTTCCTCACTGAAGTGAGCATCATTGGAAGGCTCAACCACATGAACTTGATTCAAATGTGGGGTTATTGCGCTGAGGGAAAGCATCGCTTACTAGTGTATGAGTTCATGAAAAATGGTTCTTTGGCAGATAATCTTTCATCCAATACACTTGATTGGAGCAAGAGATATAACATTGCTCTTGGAACAGCAAGAGGTTTGGCATATTTACATGAAGAATGTTTGGAATGGATTTTGCACTGTGATATAAAGCCTCAAAATATTCTCTTGGATTCGAATTTTCAACCCAAGGTTGCGGATTTCGGATTGTCCAAGTTATTAAACAGAGATGATCTCAACAACAGTCCAAATTTCTCAATGATAAGAGGAACCAGAGGGTATATGGCGCCAGAGTGGGTTTTCAACTTAGCAATTACTTCCAAAGTGGATGTTTATAGCTACGGAATTGTTCTCTTGGAGATGATAACCGGAAAGAATCCAACAGCAGATGTTCAAGCGATTAATGGAGATGAACAATACAATGGGAGGCTAGTAACATGGGTGAGACAGAAAAAGAGAGAATCTGCAACTTGGGTGGAGCAAATCATGGATTCTGCAGTAGGGTCAAATTATGATAAGAATAAGATGGAAATTTTGGCTAGAGTGGCTTTAGATTGCATAGAAGAAGACAAAGATGGAAGACCCACCATGAGCCAAGTGGTGGAAATGCTTCAAAGCCATGATTGTGATGCTAGTGGTGTAGCCTAA 2499 0.427 MMLVAFLYQAHRRRENQICGTNNTFKDSKIVVVPEFLENRSNNTNSSSDLRSIQNYDDALNKGYSTLSVEKPEQDIIVSKNGMFSSGFFKVGDNAFSFGIWFTTTRPASQTTVVWTANRDQPVNGKRSTISLSHSGNLALLDAGQFQTWSSETESFLPTQLRLSDDGNLVLEDSEGDILWQSFDFPTDTLLPGQFLTRSTQLVSSRTESNRSSGFYKLSFNDDNVLSLLYDGPDVSSSYWPPPWESSWQAGRFTYNSSRIAVLDSLGCFTSSDEYTVRTSDYGAVLPRRLTLDHDGNLRVYSQDLASERWYASWQAILDGCSIHGVCGANSVCSFDHRKGRKCSCVPGYKVKNQSDWSYGCESMFAATTCNESEFTFLEMNHAEFYGYDKNYTPNSTFTGCETLCSNDCECKGFQYSYDEASGCFKCYTKTQLLNGENSPRVAGIVTYLKVFKTKSFPAMYGEFFIRDSVCSVEIPREYLKKHVSRFLIFFLWFSAAIGVLEIACIFIVYLLIKSHRGSRIDQHGYQLATVGFRKFSYSELKKATKGFSQEIGRGAGGTVYKALLSDQGIAAVKKLNYAKQGESEFLTEVSIIGRLNHMNLIQMWGYCAEGKHRLLVYEFMKNGSLADNLSSNTLDWSKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSNFQPKVADFGLSKLLNRDDLNNSPNFSMIRGTRGYMAPEWVFNLAITSKVDVYSYGIVLLEMITGKNPTADVQAINGDEQYNGRLVTWVRQKKRESATWVEQIMDSAVGSNYDKNKMEILARVALDCIEEDKDGRPTMSQVVEMLQSHDCDASGVA 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183442g00001 832 CDD B_lectin 77 186 IPR001480 -
Stsc183442g00001 832 PIRSF SRK 48 829 IPR024171 GO:0004674
Stsc183442g00001 832 Gene3D Phosphorylase Kinase; domain 1 513 620 - -
Stsc183442g00001 832 Gene3D Transferase(Phosphotransferase) domain 1 621 829 - -
Stsc183442g00001 832 ProSiteProfiles Bulb-type lectin domain profile. 62 184 IPR001480 -
Stsc183442g00001 832 FunFam S-receptor-like serine/threonine-protein kinase 515 620 - -
Stsc183442g00001 832 Pfam S-locus glycoprotein domain 282 352 IPR000858 GO:0048544
Stsc183442g00001 832 ProSiteProfiles EGF-like domain profile. 317 355 IPR000742 -
Stsc183442g00001 832 SMART blect_4 64 186 IPR001480 -
Stsc183442g00001 832 Gene3D - 56 185 IPR036426 -
Stsc183442g00001 832 FunFam Serine/threonine-protein kinase 621 829 - -
Stsc183442g00001 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 113 204 IPR036426 -
Stsc183442g00001 832 ProSiteProfiles Protein kinase domain profile. 546 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183442g00001 832 CDD PAN_AP_plant 371 451 - -
Stsc183442g00001 832 PANTHER OS07G0415500 PROTEIN 49 823 - -
Stsc183442g00001 832 Pfam Protein kinase domain 549 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183442g00001 832 Pfam D-mannose binding lectin 112 201 IPR001480 -
Stsc183442g00001 832 CDD STKc_IRAK 552 822 - -
Stsc183442g00001 832 SUPERFAMILY Protein kinase-like (PK-like) 524 822 IPR011009 -
Stsc183442g00001 832 SMART serkin_6 546 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183442g00001 832 ProSiteProfiles PAN/Apple domain profile. 370 452 IPR003609 -
Stsc183442g00001 832 Gene3D - 186 313 IPR036426 -
Stsc183442g00001 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Stsc183442g00001 832 ProSitePatterns Protein kinases ATP-binding region signature. 552 575 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183442g00001 Stsc-Chr183442 1068 4492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183442g00001 536 823 Trihelix Transcription Factor Family AT5G38560 42.230 7.84e-64 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc183442g00001 Pkinase 6e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183442g00001 - - gmx:100784287 1027.7