Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183440g00001 AGTGTGGGAGCCGACATAAACACGAGGTTGTTCCGCGGGTATGCGACCACGGCGGCGGTGAGGGAAGGGCATCTGAAAGTGTTGGAGGTGTTCATCAATGGTGGGGCATCACAGCATGCATGTGAGGAGGCTTTGATGGAAACAAGCAACATGGGACGTGCCAGGTTTAGTGAGCTTCTCATGCAGACACACATGATTCGTCCTCACGTTGCTGTTCATGCTCTTGTCTCTGCTTCTTGCAGAGGCTTCGTTGATGTTGTTGATGTACTCATCAAGCATGGGGTGGATGTGAATGCAAGTGATAGGATATTGCTGCAATCATCAAAGCCATTTCTTCATGCCAATGTTGATTGCAATGCTTTGTTCGCTGCTGTTGTTAGTAGGCAGATTGATGTTGTCAGATTATTGTTGCAGGTTGGTGTAAAGCTTGATATGAAGGTGAAACTAGGAGCATGGTCATGGGAAACAGAAACAGGTGAAGAATTTCGTGTAGGTGTTGGTCTAGCAGAAGCATACCCTGTAACATGGTGTGCCGTGGAATATTTTGAATCCACTGGTTCTATATTGCAAATGCTTCTTAGCATTATTTCCCCAAATACATTGCACAATGGAAGAACACTTTTGCACCATGCCATCATTTGCAACAATGAGAAAGCTCTTAACATACTTCTAAACAATGGTGCTGATGTTGAAGCAGTGGTGCAAACCAATAAGGATATGAATGTGCACCCAATTCACATGGCTGCAAGGATTGGATCATGCAACATTCTTCAATGCTTGATTAATGGTGCGTGTGACTTGGATTCAAGAACAAAATCCGGTGACACTGCAATAATGATTTGCGCAAGGTATAAGCACGAGAAGTGCCTTAGAGTGCTGGCATCATCAGGTGCTGATTTGGGTTTGATGAATTCATCCGGCCATTGGTTAGCTTCTATAGCAAATTCTGTTCAATGGAGTAATGTGTTCCAGAGAGTGATTCTTGATGTGATTAGATCAGGAAAGGCCGTTAGATCAAGCAATCCTTCGAGATTTTCTGCCTTGTCGTTTGCGACTCGTGCAAACGACATAGATGCTATTAAGAGACTCATTGAGAATGCCAACGTTGATCTGAACGAGCAAAATGAAAATGGTTTCTCGGCCGCGATGATCGCAGTTTCTCTGGGTAATCTTGAGGCTTTTAGGCTCCTCCTCTACGCCGGCGCCGACATTTTTAAGCTTAAAAACAAGTATGGTATGACGACACTTAACCTCATAGATGTTAGCCAAAACGGTGAAGCATTTCAAAGGATAATGCTTGAATTTGCAGTTAAAATGGGGTGTGAAAGTGAAGATTCTAATGAAGTGAATCCTTTACACAGGGCAGCAAGATATGGAGACATAGACATTGTTCAAAAGCTATTAAGAGAAGGGAATTATGATGTGAATTCATTTGATTCACAAGGATACACACCATTGATGCTAGCTGCTAAAGCTTGTCGCGCCGACATGTGTAAGATTTTGATCTCATTTGGAGCCAAATGTGAAGTTGAGAATGAGAGGCATGAGACAGCACTTTCACTAGCAAGAGAAAATGGAAATGGAAATGAAGCAGAGAGTTTGATATTAGATGAGGTAGCTAGGAGGTTAGTTTTGTGTGGTGGTAGAGTTAAGAAACACACAAAGTGTGGTAAAGGTTCACCACATAGCAAACAACTTGGGATGGTTAAGGTTGTTGGGATTTTAAGGTGGGGAAAATCAAGTAGAAGGAATGTGGTTTGTAAAAATGCTGAGGTTGGACCAAGTGAGAGATTTAGGTGGAATAGAAGGAAGAAGTTTGATGTTGATGAAGCAGGGATTTTTCATGTGGTTACTACAAAGAATAAGGAAGTGCATTTTGTGTGTGAGGGTGGGGTTCAAATGGCAGAGTTGTGGGTTAGAGGTATTAGACTGGTTACAAGAGAAGCCATTTTTCGCAATAGAAATTAA 1968 0.4238 SVGADINTRLFRGYATTAAVREGHLKVLEVFINGGASQHACEEALMETSNMGRARFSELLMQTHMIRPHVAVHALVSASCRGFVDVVDVLIKHGVDVNASDRILLQSSKPFLHANVDCNALFAAVVSRQIDVVRLLLQVGVKLDMKVKLGAWSWETETGEEFRVGVGLAEAYPVTWCAVEYFESTGSILQMLLSIISPNTLHNGRTLLHHAIICNNEKALNILLNNGADVEAVVQTNKDMNVHPIHMAARIGSCNILQCLINGACDLDSRTKSGDTAIMICARYKHEKCLRVLASSGADLGLMNSSGHWLASIANSVQWSNVFQRVILDVIRSGKAVRSSNPSRFSALSFATRANDIDAIKRLIENANVDLNEQNENGFSAAMIAVSLGNLEAFRLLLYAGADIFKLKNKYGMTTLNLIDVSQNGEAFQRIMLEFAVKMGCESEDSNEVNPLHRAARYGDIDIVQKLLREGNYDVNSFDSQGYTPLMLAAKACRADMCKILISFGAKCEVENERHETALSLARENGNGNEAESLILDEVARRLVLCGGRVKKHTKCGKGSPHSKQLGMVKVVGILRWGKSSRRNVVCKNAEVGPSERFRWNRRKKFDVDEAGIFHVVTTKNKEVHFVCEGGVQMAELWVRGIRLVTREAIFRNRN 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183440g00001 655 ProSiteProfiles Ankyrin repeat region circular profile. 377 404 - -
Stsc183440g00001 655 Pfam Ankyrin repeat 203 231 IPR002110 GO:0005515
Stsc183440g00001 655 Gene3D - 1 153 IPR036770 -
Stsc183440g00001 655 ProSiteProfiles Ankyrin repeat profile. 377 409 IPR002110 GO:0005515
Stsc183440g00001 655 ProSiteProfiles Ankyrin repeat profile. 203 235 IPR002110 GO:0005515
Stsc183440g00001 655 SUPERFAMILY Ankyrin repeat 202 534 IPR036770 -
Stsc183440g00001 655 ProSiteProfiles Ankyrin repeat profile. 481 513 IPR002110 GO:0005515
Stsc183440g00001 655 ProSiteProfiles Ankyrin repeat region circular profile. 203 232 - -
Stsc183440g00001 655 SMART ANK_2a 343 373 IPR002110 GO:0005515
Stsc183440g00001 655 SMART ANK_2a 377 406 IPR002110 GO:0005515
Stsc183440g00001 655 SMART ANK_2a 273 302 IPR002110 GO:0005515
Stsc183440g00001 655 SMART ANK_2a 11 40 IPR002110 GO:0005515
Stsc183440g00001 655 SMART ANK_2a 481 510 IPR002110 GO:0005515
Stsc183440g00001 655 SMART ANK_2a 116 145 IPR002110 GO:0005515
Stsc183440g00001 655 SMART ANK_2a 203 232 IPR002110 GO:0005515
Stsc183440g00001 655 SMART ANK_2a 447 477 IPR002110 GO:0005515
Stsc183440g00001 655 SMART ANK_2a 240 269 IPR002110 GO:0005515
Stsc183440g00001 655 SMART ANK_2a 70 99 IPR002110 GO:0005515
Stsc183440g00001 655 SUPERFAMILY Ankyrin repeat 3 149 IPR036770 -
Stsc183440g00001 655 ProSiteProfiles Ankyrin repeat region circular profile. 481 513 - -
Stsc183440g00001 655 ProSiteProfiles Ankyrin repeat profile. 447 480 IPR002110 GO:0005515
Stsc183440g00001 655 Coils Coil 357 377 - -
Stsc183440g00001 655 Gene3D - 172 326 IPR036770 -
Stsc183440g00001 655 PANTHER ANKYRIN REPEAT-CONTAINING 4 639 - -
Stsc183440g00001 655 Pfam Ankyrin repeats (3 copies) 344 404 IPR002110 GO:0005515
Stsc183440g00001 655 Pfam Ankyrin repeats (3 copies) 238 302 IPR002110 GO:0005515
Stsc183440g00001 655 Pfam Ankyrin repeats (3 copies) 423 510 IPR002110 GO:0005515
Stsc183440g00001 655 ProSiteProfiles Ankyrin repeat profile. 74 102 IPR002110 GO:0005515
Stsc183440g00001 655 ProSiteProfiles Ankyrin repeat region circular profile. 447 471 - -
Stsc183440g00001 655 Gene3D - 434 543 IPR036770 -
Stsc183440g00001 655 ProSiteProfiles Ankyrin repeat profile. 273 305 IPR002110 GO:0005515
Stsc183440g00001 655 Gene3D - 327 433 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183440g00001 Stsc-Chr183440 3190 6667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183440g00001 228 426 Ion Channels AT2G25600 29.557 3.95e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183440g00001 - - gmx:100795638 1026.16