Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183410g00001 ATGGTTCAAATGCCGCCCCTCAACTCCAAAGTCTTCTACTTCCCACAGGGCCACGCTGAACACGCCGATGCCCATTATTCCCATGGTCAAAATTCCCATTTTGCCCCTTCCTTCAAAACCCCAATCCCACCCTTCTTCCCTTGCAGAGTCACCGCCATCAAATACATGGCGGAACCTGAAACCGACGAGGTCTACGTCAAGATCACTCTCACCCCTCTCACTCAACACCACCACCTTGCATCAGACCTAGAACGCGATGATCATTCTAGTAACAATCCTTTCTTGGACAGCAATGTTGAAAAGCCTGCTTCTTTTGCCAAGACTCTAACACAATCCGATGCCAACAATGGCGGCGGTTTCTCCGTGCCTCGTTACTGCGCGGAAACCATCTTCCCCAGGCTTGATTACTCGGCGGAGCCTCCGGTTCAGACCATAATCGCAAAAGACGTGCATGGACAGTGTTGGAAGTTCAGACACATTTATCGAGGGACACCAAGGAGGCACCTTTTGACTACTGGTTGGAGCAATTTCGTTAACCAGAAGAAGCTTGTTGCCGGTGACTCCATTGTTTTTCTCAGAGCCGAAAACGGTGACCTTTGTGTTGGGATTAGGAGGGCCAAGAAGGGTGGTATTGGCGGTGGAAATGGAACCGTCACTGCTGCTACTGCTGAGTTTTGGAACAATAGTAGTGTTTCTCCGCCGCGGTCAAGTTTTGGCTATGGCGGTGGTGAGTCTTGTGTTGTTGAGGCTGTGAATTGTGCTATGAATGGAAGGGCATTCGACGTAGTGTATTATCCTAGAGGGAGCTCGCCGGAGTTTTGTGTGAAGGCTTCTTCTGTGAGGGCTGCAATGCAGGTTCAATGGTGTTCCGGCATGAGATTCAAGATGCCCTTTGAGACTGAGGATTCTTCAAGGATCAGTTGGTTCATGGGCACCATTTCTTCTGTCCAGCTTTCAGATCCTCTTCATTGGCCTGATTCTCCTTGGCGCCTTCTTCAGGTGGTGTGGGATGAACCAGATCTACTCCAAAATGTGAAGTGTGTGAACCCTTGGTTAGTTGAACTAGTCTCAAATGTGCCAAACTTCCATCTATCTCCATTCTCACCGCCATCAAGAAAGAAACAAAGGTTCCTTCAAGACCAACCAGATTTTCACCTCATCAACCAAATTCCAATTCCACCATCATCATTCTTGAGCAACAATCTATGTAACATTCAAGACCATCATAGTTTGTCTGCAGGCATACAGGGAGCCAGGCATGCCCATCATCAATTTGGGCTCGCTCCGCATGAATTCCACATCAACACCCTTCATCATCAACCAGACATGAACATTCCAAGGCTTGATCATGCAGCACAGCAACCTGCTAGGCCTAGTTTTGGAATCTACAACAATACTGCTGCCACCAAGAACAAGAATAATAACAACAATCTTGAGATATCTTGCTTGTTGAGTGTGGGAAATCCTGGCCATAAGGAAGAAGAATCTTGTTCCAATGAAACAAAAGCACCGCACATTTTGTTGTTTGGGAAGCTCATTCACACTGAGCAGAACAACTCATCAAACACCTCAAATAGTGCTTCTGAAGGAACTAATTCATCGCCCAAGACATCGATTGAAAACTCTTCTGATGGAGGGTCTTCCTGGTACAAAGATCAGCGCAAGAACAATGACCTTGTGGGAGCTGAAAACATTAACATATTGTGTATGGCCTTATAA 1719 0.4689 MVQMPPLNSKVFYFPQGHAEHADAHYSHGQNSHFAPSFKTPIPPFFPCRVTAIKYMAEPETDEVYVKITLTPLTQHHHLASDLERDDHSSNNPFLDSNVEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGNGTVTAATAEFWNNSSVSPPRSSFGYGGGESCVVEAVNCAMNGRAFDVVYYPRGSSPEFCVKASSVRAAMQVQWCSGMRFKMPFETEDSSRISWFMGTISSVQLSDPLHWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNVPNFHLSPFSPPSRKKQRFLQDQPDFHLINQIPIPPSSFLSNNLCNIQDHHSLSAGIQGARHAHHQFGLAPHEFHINTLHHQPDMNIPRLDHAAQQPARPSFGIYNNTAATKNKNNNNNLEISCLLSVGNPGHKEEESCSNETKAPHILLFGKLIHTEQNNSSNTSNSASEGTNSSPKTSIENSSDGGSSWYKDQRKNNDLVGAENINILCMAL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183410g00001 572 Gene3D - 103 207 IPR015300 -
Stsc183410g00001 572 FunFam Auxin response factor 103 207 - -
Stsc183410g00001 572 Gene3D - 287 361 - -
Stsc183410g00001 572 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677
Stsc183410g00001 572 FunFam Auxin response factor 288 361 - -
Stsc183410g00001 572 Pfam Auxin response factor 250 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc183410g00001 572 SMART B3_2 105 207 IPR003340 GO:0003677
Stsc183410g00001 572 Pfam B3 DNA binding domain 105 206 IPR003340 GO:0003677
Stsc183410g00001 572 SUPERFAMILY DNA-binding pseudobarrel domain 98 237 IPR015300 -
Stsc183410g00001 572 CDD B3_DNA 104 205 IPR003340 GO:0003677
Stsc183410g00001 572 MobiDBLite consensus disorder prediction 517 553 - -
Stsc183410g00001 572 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 548 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183410g00001 Stsc-Chr183410 3335 5936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183410g00001 1 547 B3 DNA Binding Superfamily AT4G30080 55.106 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc183410g00001 B3 1.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183410g00001 - - adu:107467916 819.69