Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183338g00002 AATTGGCAGCGAGTCCATCTACTGCACCAAGTTCGTCGACAAGAATTTCATGAAGAAGCACACCGGACCGGACCTGGCATCCTGTTGACGGCAAATTCGGGTCCGAACATGAACGGATCTCAGTTCTTCGTCTGCACGGCGAACGCTGAATGGTTGGATGGGTATCACGTTGTGTTCAGGAAGGTGGTTGAAGGCATGGATGTGGTGAGGGAGATCGAGAAGTTTGGGTCCAGCTCCGGCAGGACATCATCGCCAAATTATCTTAGACGGTGTTGA 276 0.5181 NWQRVHLLHQVRRQEFHEEAHRTGPGILLTANSGPNMNGSQFFVCTANAEWLDGYHVVFRKVVEGMDVVREIEKFGSSSGRTSSPNYLRRC 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183338g00002 91 Gene3D - 7 91 IPR029000 -
Stsc183338g00002 91 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 26 41 IPR002130 GO:0000413|GO:0003755
Stsc183338g00002 91 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 IPR002130 GO:0000413|GO:0003755
Stsc183338g00002 91 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 69 IPR002130 GO:0000413|GO:0003755
Stsc183338g00002 91 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 20 82 - -
Stsc183338g00002 91 SUPERFAMILY Cyclophilin-like 14 91 IPR029000 -
Stsc183338g00002 91 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 85 IPR002130 GO:0000413|GO:0003755
Stsc183338g00002 91 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 13 84 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183338g00002 Stsc-Chr183338 7635 7910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183338g00002 23 73 U-box Gene Family AT5G67530 45.098 7.46e-08 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183338g00002 K01802 - csav:115704427 105.531