Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183281g00002 ATGGCTCTTTGGTTTTGCTGCGGAAATGGCAAGAAACGAGGGAAAGAAAACGCGACGTGGCGTGTGTTTTCTTTGAAGGAATTACAGTCTGCTACAAATAATTTCAACTATGATAACAAGCTTGGAGAAGGGGGCTTCGGCAGCGTGTACTGGGGCCAACTTTGGGACGGGTCGCAAATTGCAGTCAAGAGATTGAAAGTTTGGAGCAACAAAGCTGACATGGAATTTGCTGTTGAAGTTGAAATATTGGCAAGAGTACGGCACAGGAATCTTCTTAGTCTACGGGGCTATTGTGCTGAAGGGCAGGAACGGTTGATTGTATATGATTATATGCCGAATCTGAGCTTGCTCTCTCATCTTCATGGATCGCACTCGTCAGAATGCCTTCTTGATTGGAAACGGCGGATGGATATTGCAATTGGATCTGCTGAGGGGATTGTATATCTTCACCACCAAGCAACACCACATATCATCCACCGGGATATCAAAGCAAGCAACGTTCTGCTAGACTCAGATTTCCAGGCCCGAGTTGCTGACTTTGGTTTTGCTAAGTTGATACCTGATGGTGCGACACACGTGACTACTAAAGTTAAGGGTACCCTCGGATACCTTGCACCAGAATATGCCATGTTAGGCAAAGCAAATGAGAGTTGTGATGTCTACAGTTTTGGTATTCTCCTTCTAGAACTTGCTAGTGGCAAGAAACCAATCGAAAAGCTTNNNNNNNNNNATTGGGCACTGCCATTGGTATGCGACAGGAAATTTAGCGAACTCGCTGATCCACGACTAAACGGTGACTATGTGGAGGAAGAGCTTAAAAGGGTTGTTTTTACTGCACTGATATGCGCACAGAATCAACCCGAGAAGAGACCTACAATGCTTGATGTCGTTGAACTGTTAAAGGGAGAATCCAAAGACAAATTTTCTCAAATAGAGAATGATGAGTTATTCAAAAGCCCTCCAGCCATAGAAAACAGTGATGGGAAATCTGCTGCTGAAGACGACGGTTCAGACTTAATCGTGGAGGTAAAAGAATCAAAACTTGACTTGAAAGAGAATACCAGTGAATGA 1071 0.437 MALWFCCGNGKKRGKENATWRVFSLKELQSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHRNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGSHSSECLLDWKRRMDIAIGSAEGIVYLHHQATPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTKVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPIEKLXXXXWALPLVCDRKFSELADPRLNGDYVEEELKRVVFTALICAQNQPEKRPTMLDVVELLKGESKDKFSQIENDELFKSPPAIENSDGKSAAEDDGSDLIVEVKESKLDLKENTSE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183281g00002 356 SMART serkin_6 35 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183281g00002 356 FunFam PTI1-like tyrosine-protein kinase At3g15890 111 316 - -
Stsc183281g00002 356 Pfam Protein tyrosine and serine/threonine kinase 37 300 IPR001245 GO:0004672|GO:0006468
Stsc183281g00002 356 ProSiteProfiles Protein kinase domain profile. 35 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183281g00002 356 Gene3D Transferase(Phosphotransferase) domain 1 111 318 - -
Stsc183281g00002 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Stsc183281g00002 356 FunFam PTI1-like tyrosine-protein kinase At3g15890 8 110 - -
Stsc183281g00002 356 ProSitePatterns Protein kinases ATP-binding region signature. 41 63 IPR017441 GO:0005524
Stsc183281g00002 356 MobiDBLite consensus disorder prediction 311 337 - -
Stsc183281g00002 356 PANTHER OS01G0253100 PROTEIN 16 307 - -
Stsc183281g00002 356 CDD STKc_IRAK 41 302 - -
Stsc183281g00002 356 Gene3D Phosphorylase Kinase; domain 1 9 110 - -
Stsc183281g00002 356 SUPERFAMILY Protein kinase-like (PK-like) 18 300 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183281g00002 Stsc-Chr183281 1675 4639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183281g00002 23 336 Trihelix Transcription Factor Family AT1G70460 47.840 3.39e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Stsc183281g00002 PK_Tyr_Ser-Thr 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183281g00002 - - gmx:100788153 582.022