Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183254g00001 ATGTCCACCGCCGCAGCCCAAGCTAAGGCCAAGAAAACGGCTTCGTCCAAGAAGCCTCCTTCTCATCCTCCCTTCGCCGAGATGATAACGGATGCGATTTCGAGTTTGAAGGAGAGAACCGGTTCAAGCCAATACGCGATAACCAAGTTCATCGAAGAGAAGCACAAGAATCTTCCAACTTCCTTCCGGAAGCTTCTTCTCCACAACCTCAAGAAATCTGTCGCTGCAGGAAAGCTCGTGAAAGTGAAGAACTCGTTCAAGCTTGCGGCGAAAGCACCTGCTTCCGCTCCCGCCAAGGCATCTTCCACCGTCGCAAAGCCTAAAACCGCTGCGGCTTCCAAGCCTGCTTCCAGACCTAAGGCCAAAGCAACTGCCGCTCCGAAGCAGAAAGCCACCGCTAAACCTAAAGCCAATGCTGCTGAAAAGCCGAAGCCGAAGCCAAAAGCAAAGGCTCCTGCGAAGAAGGTTGCTGCAAAGCCGGTGAAGAAGACGCCGGTTAAGAAGCCAAAAAGCGTGAAGTCTCCGGCGAAGAAAGCAGCGGCGAAGAAGACTAAGAAGTGA 561 0.5294 MSTAAAQAKAKKTASSKKPPSHPPFAEMITDAISSLKERTGSSQYAITKFIEEKHKNLPTSFRKLLLHNLKKSVAAGKLVKVKNSFKLAAKAPASAPAKASSTVAKPKTAAASKPASRPKAKATAAPKQKATAKPKANAAEKPKPKPKAKAPAKKVAAKPVKKTPVKKPKSVKSPAKKAAAKKTKK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183254g00001 186 PANTHER HISTONE H1 5 171 - -
Stsc183254g00001 186 Pfam linker histone H1 and H5 family 22 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc183254g00001 186 CDD H15 19 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc183254g00001 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc183254g00001 186 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc183254g00001 186 PRINTS Histone H5 signature 108 122 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc183254g00001 186 PRINTS Histone H5 signature 142 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc183254g00001 186 PRINTS Histone H5 signature 164 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc183254g00001 186 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc183254g00001 186 SMART h15plus2 19 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc183254g00001 186 MobiDBLite consensus disorder prediction 148 186 - -
Stsc183254g00001 186 MobiDBLite consensus disorder prediction 1 25 - -
Stsc183254g00001 186 MobiDBLite consensus disorder prediction 89 186 - -
Stsc183254g00001 186 Gene3D - 16 101 IPR036388 -
Stsc183254g00001 186 SUPERFAMILY "Winged helix" DNA-binding domain 18 100 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183254g00001 Stsc-Chr183254 4779 5832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183254g00001 14 116 Single Myb Histone (SMH) Gene Family AT1G49950 32.381 1.01e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183254g00001 K11275 - fve:101308390 118.242