Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183248g00001 ATGGCTCATCAGCAGAGAGGTCAAGCTTCTTCTTCAACCAAAGTGGAAAGGAAGATCATAGAGAGAAACAGAAGAGAACAGATGAAGAACCTTTGTTTCAAGCTCAGTTCTCTTCTCCCTAACTTCAACCCTAAGGAAATTTTTCCACGTGTTGAACAAATAGAGGAGGCAGTCATCTACATCAAAACCCTAGAGTCAAGGGTTAAGATTGCTAAGGAGAAGAAAGAAAGCTTATTAAACAAGGGAATGAAGAAGAGATGTCATGGTTTAGGTAGTTCCAGTGCATTTGATGATGATGAGATTCAAGGAATAACCCTAAAAGCCCCAACTATTGAGATTCATGAACTTGGATCGATGTTAGAGATAGTTCTTATGACTTCTGGCTTTGATAACCAATTCATCTTTAAGGAGATTATTCGCATATTGCTTGAAGAGAATATTGAGGTCCTTAGTGCAAATTCTTCACTCAATGGAGATTCAATGATTCATGTTTTGCACGCACAGAACCATTATCTCTTTCAATTAGGAGCAACGAAAGTAATAAGTGAGAGATTGAAGAGGTTCGTGGACGGGCATTTGCAGGACGACATTCTAGGAGCACAGGAGCCATAA 612 0.3938 MAHQQRGQASSSTKVERKIIERNRREQMKNLCFKLSSLLPNFNPKEIFPRVEQIEEAVIYIKTLESRVKIAKEKKESLLNKGMKKRCHGLGSSSAFDDDEIQGITLKAPTIEIHELGSMLEIVLMTSGFDNQFIFKEIIRILLEENIEVLSANSSLNGDSMIHVLHAQNHYLFQLGATKVISERLKRFVDGHLQDDILGAQEP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183248g00001 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 81 IPR036638 GO:0046983
Stsc183248g00001 203 Gene3D - 4 91 IPR036638 GO:0046983
Stsc183248g00001 203 Pfam Helix-loop-helix DNA-binding domain 14 65 IPR011598 GO:0046983
Stsc183248g00001 203 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 189 - -
Stsc183248g00001 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Stsc183248g00001 203 Coils Coil 61 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183248g00001 Stsc-Chr183248 1750 3373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183248g00001 2 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.269 4.64e-24 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc183248g00001 HLH 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183248g00001 - - gmx:100817883 189.119