Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183234g00001 ATGAGTCCTGAAATAGTAGCAGTAAGAGATAACAACAACAGTGCCATTATTGATGACCTTGTGACTAACTTGCCTGGCCAGCCACTTGTTGATTTCAACCACTATGCTGGCTATGTCACTGTTAATAATGGAAGAGCACTCTTCTATTGGTTTTTTGAAGCCATCACCAACCCTCAAGATAAGCCTTTGGTTCTGTGGCTCAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACACAGATGGCAAAGCCCTTAAATTTAATAACTACTCTTGGAACAAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTAGGCTTTTCCTACTCAAATTCAACTAAGGACTATGAAAATTTGGAAGATGATATCACAGCTAATGATGCTTACAATTTTCTGCACAATTGGTTCCTCAAGTTTCCCTCATATAGAACAAGGACATTTTACATAGCAGGGGAGAGCTATGCAGGGAAGTATGTACCTGAGCTAGCAGAACTGATATATGATAGGAACAGTGACCCTTCCCTTCATATTAATCTCAAGGGTATTTTGTTGGGGAATCCAGAAACATCTGATCCTGAAGACTGGTTAGGCCTAGTTGATTACGCTTGGAGCCATGCAGTGATATCTGATGAAACCTACAAGAAAATAAGAACAAGTTGCGACTTTAATAGAAGTGATACATGGAAAAACAAAGATTGCAGTGATGGAGTTGATGAAATTCTTAAGCAGTACAATGAAATTGATATTTATAGCCTCTACACCTCTGTTTGTTTTGCCAGCACAGCACGTTCAAATGATCAAACTTTACAAACACAAATGAAACGTTCATCTAGGAAGAAAGCCCTCCATGCCAGTGATGGTCACAATCTCAAGAATTGGAGTATTTGCAACGATGATATATACAATAGTTGGAACTGGAACAAATCAAAGGCTTCTGTTATTCCAATATACAGGAAGCTTATTTCAGGAGGACTTAGGATTTGGGTTTACAGTGGAGACACAGATGGAAGAGTGCCAGTGCTTTCAACAAGATACAGCTTAAGTATTCTGGGTTTGGGTATCACTAAGCAATGGAGGCCATGGTACCATGAGAAAGAGGTTAGTGGGTGGTATCAAGAATACGAGGGTCTCACTTTTGCAACATTTAGAGGAGCTGGACATGCTGTTCCTTGCTTTAAACCAAGCAATTCACTTGCATTCTTCTCTTCCTTCCTTCTTGGACAGTCTCCACCTTCTACTAGATCCACATAA 1290 0.4047 MSPEIVAVRDNNNSAIIDDLVTNLPGQPLVDFNHYAGYVTVNNGRALFYWFFEAITNPQDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKALKFNNYSWNKEANMLFLESPVGVGFSYSNSTKDYENLEDDITANDAYNFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELIYDRNSDPSLHINLKGILLGNPETSDPEDWLGLVDYAWSHAVISDETYKKIRTSCDFNRSDTWKNKDCSDGVDEILKQYNEIDIYSLYTSVCFASTARSNDQTLQTQMKRSSRKKALHASDGHNLKNWSICNDDIYNSWNWNKSKASVIPIYRKLISGGLRIWVYSGDTDGRVPVLSTRYSLSILGLGITKQWRPWYHEKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSFLLGQSPPSTRST 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183234g00001 429 Pfam Serine carboxypeptidase 26 418 IPR001563 GO:0004185|GO:0006508
Stsc183234g00001 429 FunFam Carboxypeptidase 16 272 - -
Stsc183234g00001 429 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 20 407 IPR001563 GO:0004185|GO:0006508
Stsc183234g00001 429 FunFam Carboxypeptidase 326 420 - -
Stsc183234g00001 429 SUPERFAMILY alpha/beta-Hydrolases 21 421 IPR029058 -
Stsc183234g00001 429 Gene3D - 275 422 - -
Stsc183234g00001 429 Gene3D alpha/beta hydrolase 17 272 IPR029058 -
Stsc183234g00001 429 ProSitePatterns Serine carboxypeptidases, serine active site. 162 169 IPR018202 GO:0004185
Stsc183234g00001 429 PRINTS Carboxypeptidase C serine protease (S10) family signature 99 111 IPR001563 GO:0004185|GO:0006508
Stsc183234g00001 429 PRINTS Carboxypeptidase C serine protease (S10) family signature 390 403 IPR001563 GO:0004185|GO:0006508
Stsc183234g00001 429 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 122 IPR001563 GO:0004185|GO:0006508
Stsc183234g00001 429 PRINTS Carboxypeptidase C serine protease (S10) family signature 148 173 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183234g00001 Stsc-Chr183234 1339 3948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183234g00001 292 421 Calmodulin-binding Proteins AT2G22960 31.298 3.42e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183234g00001 K16297 - gmx:100805845 721.465