Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183211g00001 ATGAAGTTGATGATCGGTGTTGACAACGCAGCCGCGGCTGCCGTCACCTCCGAAGGTGGCCGGAAAGTTCTGGTCGGAGTGAAATTGGATACTCGGAGCCGGCAATTACTGACGTGGGCGCTCGTTAAGGTAGCGGAGCCCGGTGACCACGTCATTGCACTCCACGTGCTCGACACCATCACTGAAGGCACGTCAACGCTGCTATCTCTCGTTAAAACCTTCAATTCCGTTCTCGCCGCATACGAAGGCTTCTGCAATTTAAAGCAGATTGATTTGAAACTGAAAGTGTGTAGAGGCTTTTCGGCGAGGAAGGTTTTGGTGCAGGAAGCGACGTCGTTTGGTGTTGAGACTGTGATTCTCGGAACTACGGCGACACACCATACAATCCGGTCATCGGTATCGGTTGCTAAGTACTGCGCTAAGAAATTGCCCAAGTGTGTCTCTGTTTTCGCGATTGATAATAATTGCAAAATCGCGTTCTGCAGAGAAGCTTCTAGGGCACACTCTGATCAAGAGAAATTACAAGAAGGTCCACTACTGTTGCGAAAATCGTTGGTGGCTTGTGGTTCGAAAAACCTGAAGAGTTGTGAGAGTTGTGCGGCGGTGTTGGCACCACAAGAGGATCCTGAAAAAGATAATTCTCTGGCTTTGGTACCGATTCAGCAAGTTGACGATGCTCCTTCTCCTTGTTATTCAATTGTGATGAGGGATTCGAACCAGTCAAAACCGGGTTGGTGGCTGCTTCGCCATGTGTTCCACCCCCGGAGGCATTCCTCTAAGTCATCACTGAAAAACTCAAACTCAATTGTTTTCCAGCGCCCTTTGCGGCATCCCAGTTGGCATTTTTCAGCTGTAGTCCACCCAGATCAGAAACAGGCAAATGTTACTGACCACAATGATAAGTCCAGTTATGCCCTGGATGGAGAGAGTGGTGCCATTGTACCATTTGGATCTTCTGCCACCTTTCCTATTCCCTCCCTTTGTGGTGACTTGAGTAGTGTTTCTATAGAATTATTGGAGGGCTTGCGAGAGAAGTACTTGTCTTCGTGTATATGTTATAGTTTGCAGGAACTTGCATCTGCAACCGCTAGCTTCTCACCTGAAAACTTGGTGGGCAGAGGGGGAAGTAGTTATGTATACAGAGGACATCTTCCAGATGGCAAGGAATTGGCCGTGAAGATTTTGAAACCATCTGTAGATGTGGTGAAGGAGTTTGTTCAGGAAATTGAGATCCTTACAACTTTGGATCACAAGAATATAATATCTCTATCTGGATTTTGTTTTGAGGGAAATCATCTACTGCTGGTTTATAATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTCATGGCAATAAGAAGGACTGTGACACATTTGGTTGGAAAGAGAGGTTTAAGGTGGCTGTCGGTGTGGCCAAGGCATTGGACTATCTGCACAATGGCTGTCCGCAGGCTGTGGTCCATAGGGATGTAAAATCTTCAAATATCCTTCTTTCAGATGATTTTGAGCCTCAGCTCTCGGATTTTGGACTAGCTAGCTGGGGTACTTCTTCTTCCCATGTTGCTTCTACTGATGTGGCTGGAACTTTTGGATACCTTGCTCCTGAATATTTTATGCATGGTAGAGTTACGGACAAAATTGATGTATATGCATTTGGCGTTGTACTGCTTGAGCTTCTCTCGAATAAGAAGCCCATTGACAATGAATGTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACACGAATTGTGAAAGGTGGGAAGTTATCCCATTTGCTTGATCCAAACCTAGGCTGTGAATATGACCATTGCCAGATCAACAGAATGATTTTGGGTGCTACTCTCTGCATTAGACGAGAATCTAGATTGCGACCTCAAATCAGCCTTATATTGAAACTTCTGCAAGGGGATGAAGAAGTGACTAAGTGGGCAGAACAAGAAGTTAACACACCAGTGGGTCCTGATGGACTTGATGGGGAATCGATTCCAACTAATATTCAGTCCCACCTTAACCTTGCTTTACTGGATGTGGAGGATGACACTGTTTCTATCAGTAGCACTGAGCCGACTGTCTCATTGGAGGATTATTTACAGGGAAGATGGAGTCGCTCCTCAAGTTTCAACTAG 2130 0.4587 MKLMIGVDNAAAAAVTSEGGRKVLVGVKLDTRSRQLLTWALVKVAEPGDHVIALHVLDTITEGTSTLLSLVKTFNSVLAAYEGFCNLKQIDLKLKVCRGFSARKVLVQEATSFGVETVILGTTATHHTIRSSVSVAKYCAKKLPKCVSVFAIDNNCKIAFCREASRAHSDQEKLQEGPLLLRKSLVACGSKNLKSCESCAAVLAPQEDPEKDNSLALVPIQQVDDAPSPCYSIVMRDSNQSKPGWWLLRHVFHPRRHSSKSSLKNSNSIVFQRPLRHPSWHFSAVVHPDQKQANVTDHNDKSSYALDGESGAIVPFGSSATFPIPSLCGDLSSVSIELLEGLREKYLSSCICYSLQELASATASFSPENLVGRGGSSYVYRGHLPDGKELAVKILKPSVDVVKEFVQEIEILTTLDHKNIISLSGFCFEGNHLLLVYNFLSRGSLEENLHGNKKDCDTFGWKERFKVAVGVAKALDYLHNGCPQAVVHRDVKSSNILLSDDFEPQLSDFGLASWGTSSSHVASTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNKKPIDNECPKGQESLVMWATRIVKGGKLSHLLDPNLGCEYDHCQINRMILGATLCIRRESRLRPQISLILKLLQGDEEVTKWAEQEVNTPVGPDGLDGESIPTNIQSHLNLALLDVEDDTVSISSTEPTVSLEDYLQGRWSRSSSFN 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183211g00001 709 SUPERFAMILY Protein kinase-like (PK-like) 347 635 IPR011009 -
Stsc183211g00001 709 Gene3D Phosphorylase Kinase; domain 1 339 439 - -
Stsc183211g00001 709 SMART serkin_6 365 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183211g00001 709 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 335 439 - -
Stsc183211g00001 709 Gene3D Transferase(Phosphotransferase) domain 1 440 652 - -
Stsc183211g00001 709 Pfam Universal stress protein family 21 147 IPR006016 -
Stsc183211g00001 709 Gene3D HUPs 20 152 IPR014729 -
Stsc183211g00001 709 ProSiteProfiles Protein kinase domain profile. 365 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183211g00001 709 FunFam Putative receptor-like serine/threonine-protein kinase 440 651 - -
Stsc183211g00001 709 Pfam Protein kinase domain 368 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183211g00001 709 CDD USP_Like 22 147 - -
Stsc183211g00001 709 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 149 - -
Stsc183211g00001 709 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 20 153 - -
Stsc183211g00001 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Stsc183211g00001 709 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524
Stsc183211g00001 709 PANTHER OS08G0249100 PROTEIN 74 646 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183211g00001 Stsc-Chr183211 2582 6586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183211g00001 353 631 Trihelix Transcription Factor Family AT1G68690 43.310 3.72e-70 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc183211g00001 Pkinase 2.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183211g00001 - - adu:107463283 1273.46