Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183194g00002 ATGCCTGCCATAGCACTGGGACGTTTTGATGATTCTTTCAGCTTAGGCTCCATCAAAGCCTACATTGCTGAGTTCATCTCAACATTGATCTTTGTTTTTGCTGGTGTTGGTTCAGCTATAGCCTATGGAAAGCTGACATCAGATGCAGCACTTGACCCAGCTGGATTGGTAGCAGTAGCTGTGTGCCATGGATTTGCTCTGTTTGTTGCAGTGTCAGTTGGTGCCAACATTTCTGGTGGGCATGTAAACCCTGCTGTCACATTTGGTTTGGCACTTGGAGGCCAAATCACAGTCCTCACTGGAATCTTCTACTGGATTGCTCAGCTTCTTGGATCCATTGTTGCATGTTTCCTCCTTTCTTATGTCACTGGTGGATTGACAACTCCAATCCACAGTGTGGCAGCAGGAGTAGGAGCATTTGAAGGAGTTGTGACTGAAATTGTAATCACATTTGGATTGGTCTACACTGTTTATGCCACAGCAGCTGACCCCAAGAAGGGCTCACTAGGCACCATTGCACCCATTGCAATTGGTTTCATTGTTGGTGCCAACATCTTGGCCGCCGGTCCCTTCTCCGGTGGCTCCATGAACCCGGCTCGCTCCTTTGGCCCTGCCGTGGTCAGTGGCAACTTCCATGACAACTGGATCTACTGGGTTGGACCCCTCATTGGTGGTGGCCTTGCTGGCCTTATCTATGGCAATGTGTTCTTGCCCTCTTCCCATGCACCTCTTTCAAGTGAATTTTGA 747 0.49 MPAIALGRFDDSFSLGSIKAYIAEFISTLIFVFAGVGSAIAYGKLTSDAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLALGGQITVLTGIFYWIAQLLGSIVACFLLSYVTGGLTTPIHSVAAGVGAFEGVVTEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWVGPLIGGGLAGLIYGNVFLPSSHAPLSSEF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183194g00002 248 PANTHER AQUAPORIN-8 4 241 IPR034294 -
Stsc183194g00002 248 FunFam Probable aquaporin TIP1-1 2 248 - -
Stsc183194g00002 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc183194g00002 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc183194g00002 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc183194g00002 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Stsc183194g00002 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc183194g00002 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc183194g00002 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc183194g00002 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc183194g00002 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc183194g00002 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc183194g00002 248 Gene3D Glycerol uptake facilitator protein. 2 245 IPR023271 -
Stsc183194g00002 248 SUPERFAMILY Aquaporin-like 13 242 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183194g00002 Stsc-Chr183194 7575 9547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183194g00002 1 246 Major Intrinsic Protein MIP AT3G16240 81.781 2.80e-142 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183194g00002 K09873 - gmx:100306092 440.654