Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183188g00004 ATGGTTCTCAAATATTTTCGGTTTGGTGATTCAAAGAAGAAGAAAACGTATCCAACAGTAATAGAAGAGTTATGCCATCATTTTTCATTTGAGGCTCTTAGAAAGTCAACGAACGGGTTTGAGGAGAAACTTAAAATTGGAGAAGGAGGCTCTGGTAAGGTGTACAAAGGCTGTCTCAAACATAATAATAATGGTGATGCAACTGATTATTATACGATCGCATTGAAAGTGCTGTCTAAACACCCCAGTGAGTTCAAGAAGGAAATTGAGATGCTATGTCAGCTTCGTCACCCTAATATAATATCTCTTATAGGCTTCTGCCATCAAGAAGAGAAAAAGAGAAACCCTTACTTATTAGGCTTCGGCCATCAAAAAGAGAAAAAGATTGTTGTGTACGAGTACATGCCCAATGGATCACTTGGTGATTATTTGAGTGATAGGAACAAGAAGGAACCACTGTCATGGAAGAAAAGAATAGAGATCGGCATTGGAGTAGCACGTGGTCTGCACTACCTTCACGCTGGAGCCAAGCGTATTATCTTTCATCGTGACATAAAACCCGGTAACATTCTTTTGGACAAGAATTTGGTCCCCAAAATCTCGGATTTTGGGATATCATTGCAGGGACCTCTCTCTACATCAAAGCCAAAGAAAATTCAACTAGATGAATTAATGGGTACATATGGATACATTGCTCCTGAACAGATTAATCCTGATAATAATAATAATGGTATCACAGATAAATGTGATGTTTACTCCTTTGGTATGGTTCTACTACAATTGGTGGTGGCCAGTCATAACGTGGTTCACTACTTAATTCAGCATGGAAAGCACGCCACCACTACCACTCTTGAAGAGACAATGGATCCAATTCTGAATGGAAAGATTGCACCAGAGTGTTGGCAAGTGTTTACTAGTGTGATGAAGAGTTGTTTGCAGGACAAACCAGAGGAGCGACCAACAATGGGTGAAGTAGAGGTATTGCTTGACCATGCTCTCTCATTGCAACAACAACAAGAAGCTGATGATGATATTACAAACACCAATGCTTCTCATGAATATACCTTGTTATCCACTACTTATTTGTTCGATATATTCAACAAGTTTAAAAAACCTACTACACGGGGAATTCGCCGGCTACAGAGGCGTAAACGAAGATGGGGATCCTTCTTCAAAAACAAACGGGGTCAAAAGACTTCTCTACCCCACCCCAGTCAAGAGGATGCAAATGCAATACTGGTAGTGAATTATTGTGGGCCCTTATCTACTCCAATCATTAGTCCTCAACTCAACCGCTCTAAAATTTGGTATAGCAAATTTACTAAAACTTGA 1332 0.3979 MVLKYFRFGDSKKKKTYPTVIEELCHHFSFEALRKSTNGFEEKLKIGEGGSGKVYKGCLKHNNNGDATDYYTIALKVLSKHPSEFKKEIEMLCQLRHPNIISLIGFCHQEEKKRNPYLLGFGHQKEKKIVVYEYMPNGSLGDYLSDRNKKEPLSWKKRIEIGIGVARGLHYLHAGAKRIIFHRDIKPGNILLDKNLVPKISDFGISLQGPLSTSKPKKIQLDELMGTYGYIAPEQINPDNNNNGITDKCDVYSFGMVLLQLVVASHNVVHYLIQHGKHATTTTLEETMDPILNGKIAPECWQVFTSVMKSCLQDKPEERPTMGEVEVLLDHALSLQQQQEADDDITNTNASHEYTLLSTTYLFDIFNKFKKPTTRGIRRLQRRKRRWGSFFKNKRGQKTSLPHPSQEDANAILVVNYCGPLSTPIISPQLNRSKIWYSKFTKT 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183188g00004 443 SMART serkin_6 40 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183188g00004 443 Gene3D Transferase(Phosphotransferase) domain 1 135 355 - -
Stsc183188g00004 443 Gene3D Phosphorylase Kinase; domain 1 6 114 - -
Stsc183188g00004 443 Pfam Protein kinase domain 40 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183188g00004 443 ProSitePatterns Protein kinases ATP-binding region signature. 46 76 IPR017441 GO:0005524
Stsc183188g00004 443 FunFam Os07g0541700 protein 135 221 - -
Stsc183188g00004 443 SUPERFAMILY Protein kinase-like (PK-like) 25 327 IPR011009 -
Stsc183188g00004 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Stsc183188g00004 443 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 335 - -
Stsc183188g00004 443 ProSiteProfiles Protein kinase domain profile. 40 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183188g00004 Stsc-Chr183188 7589 9373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183188g00004 10 344 Receptor kinase-like Gene Family AT5G39000 37.536 5.33e-64 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc183188g00004 Pkinase 7.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183188g00004 - - adu:107486591 419.468