LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc183188g00001	ATGGATAATCACAAAACGAAGGTGATAGAACAGTGTCAAATCGGTCCTCCACCAGGTTCTGTTTCTTCAACTTGTATTCCCCTTACTTTCTTTGATATTCCATGGCTCTGTTGTCCTCCAATCAAACTCATTTTATTCTATGATTTCCCTCACACCACAACCCACTTCCTCCATAAAGCCCTTCCAAATCTGAAACAATCACTTTCACTCACTCTCAAGCACTTCTTCCCTTTCTCTTCTAACATTGTTTTCCCTCCAAAGCCACAAACCCCTCACATCCTCTACAAACAAGGAGACACTCTTTCCTTTACAGTTGCTGAGTCCACAACAAATTTCAACAACCTCGTATCTGACACACCAAGAGATGTCACGTGCTTGCACCCTTTTGTTCCTGTTTTACCCTCACCACGTTCCTTAGAAGAAGATCAAACCTTGTTGATTTCACCTATGGCCGTTCAGGTCACTATCTTCCCCAACTCTGGCTTCGCCATCTGCATCTCTCGCAGACACGTGGTTGCTGATGGGAGAGCTTTTTATCACTTCATGAAGTTTTGGGCCTCACTTTGTGGGCCTAAAGTGGGCCTTGATTTACCATTACATGATAGGGATATGATCCAAGACCCAAATGGGCTCAGGCCCAGTTTCCTAGAAGCTATTTGGAATATCCCTATTAAAACCATGGAGTCCACTGGCCAAGTTAAAAATCTTCCTAGTGACTTGGTGAGGCGCACGTTTGTGTTAAGGAGTGAGCATGTTGAGAATTTGAAGAAATATGTGTTTGCTAAATGCAAAAGTCATGGTCTAGAGACATTGCATGTTTCAACATTTGTGGTGGCATGTTCTTTGATTTGGGTTTGTAAGGTGAAGTCAGAAGATAGTGGCAAAGATGATGATGGTGTTACACTTTCCAATAATGATGATGAAGTACACATCTTGGCAATTATGGCAGATTCTCGTATCCTTCCTCAATTTTCAATTCCATTAACATACTTTGGTAATTGTGTGGTTTGTGGGAATGCACAAGTTACTAGGGGGAAATTAGTTGGACAAGATGGTGTTTTTGAAGCTGCCATTGCTATTGGAAGCAAAATTAGATGCTTGCAATATGAAGGTTATAAAGGTTCTGAAACATTGATGTCAAATTTTACTGAGTTTGCCAGATTGGGGAAGCATATGTTATTAAACTGCAGGGTAACCAAAGTTGGATGTGTATGA	1215	0.4123	MDNHKTKVIEQCQIGPPPGSVSSTCIPLTFFDIPWLCCPPIKLILFYDFPHTTTHFLHKALPNLKQSLSLTLKHFFPFSSNIVFPPKPQTPHILYKQGDTLSFTVAESTTNFNNLVSDTPRDVTCLHPFVPVLPSPRSLEEDQTLLISPMAVQVTIFPNSGFAICISRRHVVADGRAFYHFMKFWASLCGPKVGLDLPLHDRDMIQDPNGLRPSFLEAIWNIPIKTMESTGQVKNLPSDLVRRTFVLRSEHVENLKKYVFAKCKSHGLETLHVSTFVVACSLIWVCKVKSEDSGKDDDGVTLSNNDDEVHILAIMADSRILPQFSIPLTYFGNCVVCGNAQVTRGKLVGQDGVFEAAIAIGSKIRCLQYEGYKGSETLMSNFTEFARLGKHMLLNCRVTKVGCV	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc183188g00001	404	Gene3D	-	236	400	IPR023213	-
	Stsc183188g00001	404	Pfam	Transferase family	23	337	-	-
	Stsc183188g00001	404	PANTHER	-	6	386	-	-
	Stsc183188g00001	404	Gene3D	-	5	231	IPR023213	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc183188g00001	Stsc-Chr183188	1971	7522	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc183188g00001	64	357	Monolignol Biosynthesis Gene Families	AT5G48930	23.762	2.16e-10	60.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc183188g00001	-		-	gmx:100782335	518.464