Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183142g00001 ATGAAAACATCAATGCAACCTCCTAAAGATGTACCTTCTTCTGCTGCAAATCTTAACATGCTGAACCTTCCAACACACCAATTCTTGATTGGTGTGCCTCCACCACCACCACCACCAACAAACATTCCTCCAATCTATGTATCTGGAGTTTCTGCTCAGAGGTTGAAAGAATTTGTCCACCGGCAGCAGTGCCGGCCGGCCGACAACAACATTAGTTTCTGGAGGAACTTTGTGGCTGAGTTTTTCGCTCCGAATGGCAAGAAGAAGTTCTGCTTCTCCTTGTATCCGAGACTAAGAAACCCAGCCTGTTTTTTCCTGAGTGACTTGAGAACATGCCAGGCATGCAGGAGGAATCCCTGTAATGGTTTTGAACTGTGTTATGAGATTCTTCCAAGGCTTTTCAAGATGAAATATGAAAGTGGACTATTGGAAGAGAATATTTTTTTGGACATTCCCAGAGAATACAGAGACCCTTCTGGCTATATTGTTCTGTTCTGTTCAAAGGTAACAAGAGAAAGCTTGTTCTACAAGGTTCGCGTTGTCCACGAAGGTTCCCTCCGAATAGTCTTCTCCCCTTGCCTCAAAATACGCTCTTTGGAATTCTGCGCGAAGCGCCATGAAGTGCTCATCTACAGAAGTTATTTGGTTCCTGATGTGAATCAGGTTAGTGATGCTGTTTCAAATTTCTCTGATTTCATAGCCAATAATATTAACAACAACAATGTTTCTACTGAGGAGTATGGAGAGTGTAGCAATAACCTGGTTGCAAGCACACAAGAATTGGCTAAGAAATTGGAAGTTCCAATGCTTGATGATAATGTAGGGTTTGCTAAGAGCTATGTTAGGTGCCTACAAATATCACAAATTGGGAACAACATGAAAGACTTGATTGATTTCAGCATGGAGAATGAGATTGGACCTATTGAGAGCTTAGCTAGGTTCCAAAACAGAACTGGAGTTGTTGATCATGGTGAAGATGAATTGCAACAGCAAAATGGGGATCATGATTTGAATAATTGTGATGATAACAATGAACAAACACCTGGTGTACAAATTGGTTCTTCTAGGAATGGTACTCGAGTCACCACAAGCACTGTTCGGATTCATAATTCTGTTGATTATAGGGCTCTAAATTCAGAGAACAATGAACAGAATGTTGATATTCAACCCCAAATTCGCTCAGGTAACAGAGGTAGGGGTGTGCTCGACTAG 1212 0.4167 MKTSMQPPKDVPSSAANLNMLNLPTHQFLIGVPPPPPPPTNIPPIYVSGVSAQRLKEFVHRQQCRPADNNISFWRNFVAEFFAPNGKKKFCFSLYPRLRNPACFFLSDLRTCQACRRNPCNGFELCYEILPRLFKMKYESGLLEENIFLDIPREYRDPSGYIVLFCSKVTRESLFYKVRVVHEGSLRIVFSPCLKIRSLEFCAKRHEVLIYRSYLVPDVNQVSDAVSNFSDFIANNINNNNVSTEEYGECSNNLVASTQELAKKLEVPMLDDNVGFAKSYVRCLQISQIGNNMKDLIDFSMENEIGPIESLARFQNRTGVVDHGEDELQQQNGDHDLNNCDDNNEQTPGVQIGSSRNGTRVTTSTVRIHNSVDYRALNSENNEQNVDIQPQIRSGNRGRGVLD 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183142g00001 403 MobiDBLite consensus disorder prediction 378 403 - -
Stsc183142g00001 403 Pfam LIM-domain binding protein 54 311 IPR029005 -
Stsc183142g00001 403 MobiDBLite consensus disorder prediction 378 392 - -
Stsc183142g00001 403 PANTHER LIM DOMAIN-BINDING PROTEIN 39 377 IPR029005 -
Stsc183142g00001 403 MobiDBLite consensus disorder prediction 330 362 - -
Stsc183142g00001 403 MobiDBLite consensus disorder prediction 333 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183142g00001 Stsc-Chr183142 3750 4961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183142g00001 38 319 C2H2 Transcription Factor Family AT1G43850 52.482 1.26e-91 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183142g00001 - - adu:107458399 476.478