Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183129g00001 ATGGGAAAGTGCGCCTTTCAGGATTACCTGAAAGCTCTTGAAGCTGATATTCAGTGTGCTAATACTATGGCATTAAGTTATCCAAGGGAAAAAGATGGAGGATGCTATCAGATGAGACTATCATATAGTCCAGCAGCCCCCATTTTTCTATTTCTTATTAAGTGGGCAGATTTTCGCCTTGCTGCTGCTTTTGGTCTTCTCAGAATCCTAATTTACGTGAATTGTGGAAGTGGGAAGAATACCATGTCAATATATGAAAGGAAAGCAAGCATTAGGCAATTTTACACTGTGATATTCCCAGCTTTATTGCAACTCCAGAAAGGGATCACAGATTTGGAGGAAAGAAAACAGAAGGAAATGTATTTGCTTAGGTACCAAAGTAAAAGTGATTTTGAAGTTAAAGGGGGAGAATACGAAATTGACAATGAAAGAGAAGAGGAATGTGGTGTTTGCTTGGAGGTGAAAGGGAAAGTTGTGCTGCCTAATTGCTGTCACACTATGTGTTTGAATTGCTACAGAGATTGGCGTGTGAGGTCTGAGTCTTGCCCCTTCTGTAGGGATAGCCTAAACAGAATGAACTCTGGTGACCTTTGGATTTACACAGACAAGAGTGACATTGTTGATGTTGCCACAATTTTCAGAGAGAATTCCAAGATGCTATTTCTGTATATAGAGAAGTTGCCCCTTGTAATTCCTGACCCAAGACATGTTTCCTATGATCCATTCCTAAGGTGA 735 0.4027 MGKCAFQDYLKALEADIQCANTMALSYPREKDGGCYQMRLSYSPAAPIFLFLIKWADFRLAAAFGLLRILIYVNCGSGKNTMSIYERKASIRQFYTVIFPALLQLQKGITDLEERKQKEMYLLRYQSKSDFEVKGGEYEIDNEREEECGVCLEVKGKVVLPNCCHTMCLNCYRDWRVRSESCPFCRDSLNRMNSGDLWIYTDKSDIVDVATIFRENSKMLFLYIEKLPLVIPDPRHVSYDPFLR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183129g00001 244 PANTHER RING FINGER PROTEIN 41, 151 5 236 - -
Stsc183129g00001 244 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Stsc183129g00001 244 SMART ring_2 148 185 IPR001841 -
Stsc183129g00001 244 FunFam RING/U-box superfamily protein 129 195 - -
Stsc183129g00001 244 SUPERFAMILY RING/U-box 139 191 - -
Stsc183129g00001 244 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Stsc183129g00001 244 Pfam Zinc finger, C3HC4 type (RING finger) 145 190 - -
Stsc183129g00001 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 195 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183129g00001 Stsc-Chr183129 4494 7145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183129g00001 60 217 C3H Transcription Factor Family AT1G04360 25.767 1.62e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183129g00001 - - gmx:100808567 403.29