Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183123g00001 ATGTCGTCGATCAACCACGAATCTCAGAAATTGGACTGGCACTTCAACACGGAGCTCGAGGACGAGACAATCGAACTCCGAGGCCGGAAGCTCATCTTTGTTATCATCCTCTTCGCCATTATCCTCATCACCACCGCCTTCTTCCTCTACCTCCGCTGGATCTGCCGCTCCCGCGGCCTCGCCCCGGTCGCATCGATCCACCACCACTTGCCGCTGCATACTCAACCTCGGTCCAACGGCTTGGACGCTGCCACCATCAAGAATCTCCCGATCGTGCTTTACCAGGCGCCGCAAACAGCATCTGCAACAGATCCGAACCGCGGCGGCTCGTTGGAATGCTGCATATGCCTTAGCGCGTTCCGCGACGAGGAGAAGCTGAAGATTCTTCCCGGTTGCGAGCACCGGTTCCACTGTGAGTGCGTGGACAAGTGGCTCACGAATCACTCGAGTTGCCCTTTGTGCAGAGCTTCTCTGAAGCTCCCACCTCCCTTACCAGGGATTTTGTATCAAGAACCTCCTATTAGAATCACTATTAACAATGAACAATGA 549 0.5483 MSSINHESQKLDWHFNTELEDETIELRGRKLIFVIILFAIILITTAFFLYLRWICRSRGLAPVASIHHHLPLHTQPRSNGLDAATIKNLPIVLYQAPQTASATDPNRGGSLECCICLSAFRDEEKLKILPGCEHRFHCECVDKWLTNHSSCPLCRASLKLPPPLPGILYQEPPIRITINNEQ 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183123g00001 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 161 IPR013083 -
Stsc183123g00001 182 FunFam E3 ubiquitin-protein ligase ATL6 71 161 - -
Stsc183123g00001 182 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Stsc183123g00001 182 SUPERFAMILY RING/U-box 86 164 - -
Stsc183123g00001 182 SMART ring_2 113 154 IPR001841 -
Stsc183123g00001 182 Pfam Ring finger domain 112 155 IPR001841 -
Stsc183123g00001 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183123g00001 Stsc-Chr183123 4546 5608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183123g00001 8 160 C3H Transcription Factor Family AT3G11110 37.662 1.81e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183123g00001 - - adu:107496923 310.842