Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183069g00001 ATGGAAATGGAAGATCATCACCAATTTAATCTTCATCAGAACCACCACTACGCTTGTTTAACCGATCTGTTAATGAATAACAACGCTCCTATGCAACAACCACAACCACCACCAATAACCAGCCACCATCACCACCTGCCGCCGTTGCCGGAGACAACGGCGATGATGTTTGAGATGATGGGGCCACGTGGGATGGTTGTTAATGAATCAGATTCAGGTGTAGTAGGGTGCATGATGGGTGGTGGGGATGCATCATCATCATCAAAGGGAAGATGGCCAAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTAAGCTTCACCCTAAATTCAAAGATGCTAATCACAAAGGTCCCTTATGGGAACAAGTCTCTAGGATAATGTTAGAAGAATATGGATACGAAAGGAGTGGAAAGAAATGCAGGGAGAAGTTTGAGAATTTGTACAAATATTATAAGAAGACAAAGGAAGGAAAAGCAGCAAGACAAGATGGGAAGCATTACAGGTTCTTTCGCCAACTTGAAGCTTTGTATGGAGACAACAACACCACCAACAACCTTAATTTACAAACAAAGAAGAATTATTGTGATAATGATAATAATAATAACAATAATAATAGTATAGGCCTCGTAAATTCTGCTAGTGAATTTGACATATCATCATCAGAGAATGACGATGATGATGAATCGATGATGACAAAGAGGAAGAGGAGGAGGTGGAAGATGAAGACGAAGGTGAAGGAGTTCATTGACTCGCAAATGAGTAAGCTTGTGAAGAAGCAAGAGGAATGGCTTGAGAAGTTAGTGAAGACAATGGAAGAGAAAGAGAAGGAGAGAGTTGTAAGAGAAGAAGAATGGAGAAGGGAAGAGGCAACTAGGTTGGAGAAGGAGCATATGTTTTGGGCCAAAGAAAGAGCTTGGATTGAAGCTAGGGATGCTGCATTGATTGATTCTTTGAACAAGTTAACAACAAGAAGAGAAACCATCATCATCAAGCCTCAAGATCAAGAACAAGAACAAGAAGAAGCACAAGAAGCTCCTCCTCATGTTCATGATGATGAAGATGATGATGGTGTGATGATGATGATCATGGGAGATGAAGAAATCGTCAAAATTCAAAATCAGAATGAGGTCGAAGAAGATATCAGAGAAAAATACTTGTATGTTTCAGAAGAATATTTAATGCGTGCTTCAGAAACATCTACAACAATTCATTTTTAA 1221 0.3972 MEMEDHHQFNLHQNHHYACLTDLLMNNNAPMQQPQPPPITSHHHHLPPLPETTAMMFEMMGPRGMVVNESDSGVVGCMMGGGDASSSSKGRWPRQETLTLLEIRSKLHPKFKDANHKGPLWEQVSRIMLEEYGYERSGKKCREKFENLYKYYKKTKEGKAARQDGKHYRFFRQLEALYGDNNTTNNLNLQTKKNYCDNDNNNNNNNSIGLVNSASEFDISSSENDDDDESMMTKRKRRRWKMKTKVKEFIDSQMSKLVKKQEEWLEKLVKTMEEKEKERVVREEEWRREEATRLEKEHMFWAKERAWIEARDAALIDSLNKLTTRRETIIIKPQDQEQEQEEAQEAPPHVHDDEDDDGVMMMIMGDEEIVKIQNQNEVEEDIREKYLYVSEEYLMRASETSTTIHF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183069g00001 406 ProSiteProfiles Myb-like domain profile. 84 149 IPR001005 -
Stsc183069g00001 406 MobiDBLite consensus disorder prediction 331 357 - -
Stsc183069g00001 406 Gene3D - 92 154 - -
Stsc183069g00001 406 PANTHER FI21293P1 31 335 - -
Stsc183069g00001 406 Pfam Myb/SANT-like DNA-binding domain 91 177 IPR044822 -
Stsc183069g00001 406 CDD GT1 91 156 - -
Stsc183069g00001 406 MobiDBLite consensus disorder prediction 28 47 - -
Stsc183069g00001 406 Coils Coil 258 285 - -
Stsc183069g00001 406 FunFam trihelix transcription factor PTL-like 92 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183069g00001 Stsc-Chr183069 5208 7904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183069g00001 91 333 Trihelix Transcription Factor Family AT5G03680 53.585 1.47e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc183069g00001 Myb_DNA-bind_4 1.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183069g00001 - - aip:107628057 486.493