LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc183055g00001	ATGGCGAAAACACATTCACCTCTCGAGCCACACGAACTCAGTACCCAATCTGAAGGGTCTGACCAGGGTTCCTACTGTGACGATTTCGAAGGAGATCCTGATTATGAAGAAACGGAGACCAAGTTCTCATCCCTCTCACTCTCACTTCCCAGGAACAAGCCAAAATCAAGTGATGTTGTTGTTACAAATCCAGAAGAGACACCTGCTTTTAACGAAGAAAATTTTGAGAGAGTTCAAAGCTTAATCAAAGTGGGAATGGTAGAGAGATTGAAAGTTGATGAATGCAAGTTGTATTTGCGGAAGAATTGTCTGAGACTATCCGGAAATAAGGATGTACTCATCCAGCGTATTAAGGAGCATCTGGAGATCATAAATGGTGGAGGGGAGGGAAAGTACCCACCTTCTAGCTTTGTGTTGGACTGTAAAGGTGATGCATGCACCGGTGATGTTGTTTTGTTTGAGCAGAATGTTTATGAAATGTTCAACATAGCATCCAGAAGTGCCAGCGGTCCATCATGTGGTAAAAGGACTGTTGCAGGCCGCATAGTTAAAGAAAGCTATGGCACTGCCAAGCAGCAGCATACTTTTACGATTGAAGTACTCTGGAGCAAAGGAGAAAAGCCTTTTCCTCCACTTCATCCCCTTTTGATCAAGGGTCGAAACCTTTATCGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGGAAAGGCAGAGAATATTGAGAGAGAAACACTCAAGGGGATCTATTGCTCGAGCAGATAGAGAAGCAAGGGTACAAGAAAAACAAGAAAAAGTGAATAGAAAAACAATTATGGAAAACAGGGTCTCCAATAAGTGTTCAGTAATAAATCATCCCGAAGAAATAGACACATCCATTGATGAAAAACCACTCTTCCCTTCAGCTTTAACAACCAACATAAGAAACAAAATGTCTGTTAATAAACCACCAGCAGTGACTGAATCGTGGGGTAAGTCTGATAGTTCTAGAAGATCGAATGAAACGACACCGTTTGGTGTTAACCATATAAATAATGAGCAAGATTGGAAGCACTCATCTCACCATATCAGTGAAGCTCAACTTGGTGACTTCCATTCCAGAGAAAGAGAGAAACACCAATACCAATACCAATACCAGCCTCATACCTCTGAGAGAAACAGGTTTGGTGTTAACCATATAAATAACCAGCAAGATAGGAAGCACTTATCTCACCATATCAGTGAAGCTCAACTTGGTGATTTCCATTCCAAAGAAAGAGAGCAATACCAATACCATCCTCGTAACTCTGAGAGAAACAGTTTTGCACACAGAAAGCCTTTGACAAGTGCTAATCACTTTCCTCCATTGCCGAACAACAGAGAAATGTATAAGCAAAAGCAGCTATGTAGATATTATGCTCGTGGGCGGTGCTATTTTGGGGACAACTGCAAATTTGTGCATGATTTGAGAGCTCGTGCTGTTCACCCAAAATCAAAAGTGAAGCGAAGGCAGTTAATTAGCACAACCACTGCCCGAAGAGTATCCATCACCTCGTGGCTTCTCACGCAACATCGCCATTCAAACTTTCTCATCTCATTCAGGGAAGCAATGGCATGGAGAGGACATCTTTCAAAGAACATAAGGGAGATTCGGTTTTTGATGTGCCAGTCGTCAGCTGCAAGCTCACCTGCAAGGACATTTGTGGAAAAGAATTATAAAGAACTGAAGACTTTGAACCCAAAATTGCCAATACTGATCCGCGAAAGCAGTGGAGTGGAACCCCAATTATGGGCAAGATACGATTTTGGTGTTGAGAAGGGAATCAAATTGGAAGGCCTGTCTGAGGCACAGATCTCCAAGGCACTTGAAGATTTGGTGAAAGCTGGAGAGTCTTTGAAAGCCTGA	1887	0.425	MAKTHSPLEPHELSTQSEGSDQGSYCDDFEGDPDYEETETKFSSLSLSLPRNKPKSSDVVVTNPEETPAFNEENFERVQSLIKVGMVERLKVDECKLYLRKNCLRLSGNKDVLIQRIKEHLEIINGGGEGKYPPSSFVLDCKGDACTGDVVLFEQNVYEMFNIASRSASGPSCGKRTVAGRIVKESYGTAKQQHTFTIEVLWSKGEKPFPPLHPLLIKGRNLYRLKTLRQKWEDEGERQRILREKHSRGSIARADREARVQEKQEKVNRKTIMENRVSNKCSVINHPEEIDTSIDEKPLFPSALTTNIRNKMSVNKPPAVTESWGKSDSSRRSNETTPFGVNHINNEQDWKHSSHHISEAQLGDFHSREREKHQYQYQYQPHTSERNRFGVNHINNQQDRKHLSHHISEAQLGDFHSKEREQYQYHPRNSERNSFAHRKPLTSANHFPPLPNNREMYKQKQLCRYYARGRCYFGDNCKFVHDLRARAVHPKSKVKRRQLISTTTARRVSITSWLLTQHRHSNFLISFREAMAWRGHLSKNIREIRFLMCQSSAASSPARTFVEKNYKELKTLNPKLPILIRESSGVEPQLWARYDFGVEKGIKLEGLSEAQISKALEDLVKAGESLKA	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc183055g00001	628	MobiDBLite	consensus disorder prediction	9	23	-	-
	Stsc183055g00001	628	MobiDBLite	consensus disorder prediction	316	345	-	-
	Stsc183055g00001	628	Pfam	SAP domain	88	121	IPR003034	-
	Stsc183055g00001	628	SUPERFAMILY	CCCH zinc finger	457	482	IPR036855	GO:0046872
	Stsc183055g00001	628	SUPERFAMILY	Thioredoxin-like	540	622	IPR036249	-
	Stsc183055g00001	628	FunFam	NADH-ubiquinone oxidoreductase 10.5 kDa subunit	532	622	-	-
	Stsc183055g00001	628	Pfam	CCCH-type zinc finger	462	482	IPR041367	-
	Stsc183055g00001	628	SUPERFAMILY	SAP domain	77	122	IPR036361	-
	Stsc183055g00001	628	PANTHER	SAP DOMAIN-CONTAINING PROTEIN	23	484	-	-
	Stsc183055g00001	628	MobiDBLite	consensus disorder prediction	40	60	-	-
	Stsc183055g00001	628	Pfam	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain	558	608	IPR007741	-
	Stsc183055g00001	628	SMART	L51_S25_CI_B8_2	550	623	IPR007741	-
	Stsc183055g00001	628	Gene3D	-	451	512	-	-
	Stsc183055g00001	628	MobiDBLite	consensus disorder prediction	422	453	-	-
	Stsc183055g00001	628	ProSiteProfiles	Zinc finger C3H1-type profile.	457	484	IPR000571	GO:0046872
	Stsc183055g00001	628	SMART	c3hfinal6	458	483	IPR000571	GO:0046872
	Stsc183055g00001	628	Gene3D	Glutaredoxin	529	622	-	-
	Stsc183055g00001	628	MobiDBLite	consensus disorder prediction	1	60	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc183055g00001	Stsc-Chr183055	3144	11100	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Stsc183055g00001		L51_S25_CI-B8	8.3e-13	CL0172

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc183055g00001	-		-	adu:107464672	640.958