Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183020g00002 ATGGATTGCATGACAATCCAAAGCACCTTGTCTCATAAGAAGAATTGGAAATATGATGTGTTTGTGAGTTTCAGAGGCGAGACTCGCTACAACTTCACTGATCATCTTTTTGATGCTCTCCACAGACACAGCATACGTGCCTTCAGGGATGATACTAAGCTCCAGAAAGGAGGATTGATATCAGAAGGACTTATGCAAGCTATTGAAGGATCACAGGTTCTGATTGCTGTCTTCTCAGTGGACTATGCTTCCTCCACATGGTGCTTACGAGAATTAGCAAAAATAGCTGATTGCATTCAAGTAACAGGGCAGCATGTTCTACCTGTTTTCTATGATGTGAGTCCAGCTGAGGTGAGATGGCAAAGTGGAAATTATGAAAAAGCCTTTCTGAAACATGAAGAAAGATACAAAGAAGATGTAGAGATGATGGAGCAAGTGCGAAGATGGAGGAGAGCTCTAAAAAAGGTAGCAGATCTATCTGGCTGGGATGTGAAGGATAAGTCGCAATCTGCTAAGATCGAGGAAATTGTCAAAGCCATAACAAGCATATTGAGTCCCAAAGCATCATCAAGTCTATCTAATGATATAGTTGGGATGCACTCCCCTTTAGAAGAACTAGAAAAGCTTCTAGTTTTGGGCTTGGATGATGATGTTAGAGTTGTAGGGATTTGTGGAATGGGTGGTATAGGAAAGTCAACTCTTGCCGCCATTTTATATGAAAAAATCTCTCATCAATATGATGCTTCATGTTTTGTTGATGTTGTAAGCAAAACTTATGGAGATTATGGTTCACTTGGTGTACAAAAGCAACTTCTTTGTCAAGAAGAAGATTTTCTTACATACAATCTTTCCTTGGCAAATAACCTAATTCAAACTAGGTTATGCCATAGAAAGGTTCTCATGGTTCTTGATAATGTTGAAAATGGGATTCAGTTGGAGAAGTTGGGTCTAAAACGTGAATTTCTAGGTAGAGGGAGTAGAATAATCATAATTTCTAGAGATGAGCATATGCTGAGAGAGTATGGAGTGGATGGAGTTTACAAAGTTCAACTCTTAAATTATGAGAATTCTCTCCAATTGTTTTCCAGAAAAGCTTTCAAAAGTAATCATGTTGCAAAAGATTACGAAAGCCTGACAAAGTCTGCATTGAGATATGCTAATGGACTTCCGTTAGCGATAAGAGTATTGGGCTCATTTTTGTATGGGCGAGATGTGTGTGAGTGGAGAAGTGCATTGGTTAAACTGAAAGAATATCCAACAAAAGATATCATGGATGTGCTACGAATCAGTTTTAATGGACTTGACCATATGGAAAAGGAAATATTTCTTGATATTGCATGTTTCTTTCCCAATGGGAGTGGAGAATGGCATGTAAAAGGTATTTTAAATATTCGAGGATTTCATCCTGATATTGGTATGAGAATTCTCATTGATAAATCACTCATAACTCGTAATCAATGGGGGATCAATATGCACGATTTGTTGAGAGAGTTGGGTAGAAGTATTGTTCGAGAAAAATCACCCAAAGAACCAAGAATGTGGAGCAGGTTATGGAATCAAGAGGATCTAAGCCATGTCTTGTGTGAAAACAAGCCATCAGAGAACCTTGAAGGCATAGTTTTACCAAGATTTCTGGAAAATAGGGAAGAGTTATCAAAAAGGACAACATTGAGAGTTGAAGCTTTGTCACAAATGAGACACCTTAAATTACTCATCCTTGGAGGAGTGAATTTCTCAGGATGCCTTGATTTTCTTTCTAATGAGTTGGGATATCTTGATTGGGAAGACTATCCTTTCACCTGTTTGCCATCAAGCTTTCAGCCAAATAAACTCATTCAATTGATCCTACACCATAGCAACATCAAAGAACTTTGGGAAGGAATAAAGGATCTACATAATTTGAAACGTATGGAACTATGTTATTCCAAAAATCTTGTGAAGATACCAAATTTATCTCAGGCCCCAAACCTTGAGTACCTAGATTTTAAAGGATGTGTTAAACTTGTTCATCTTGATGCTTCTATTGGTTCTCTAGAAAAGCTTCGTTATTTGAATCTGGAAAACTGCAAAAATCTTGTTAGTATTCCTAACAGCATATTTCATCTTAATTCACTTCGTAATTTAAGTCTATCTGGCTGTTGGAAATTACTTAAATATCAGTTGTTAGAGAAGCCAAGACAAAGCGAGCAGATGAGTAGAGGTCAAAGTGTACAGAGGCACATGACATCCTCCATATGCAAAACTCTTACAAGGCCTCTCCATTTTCTCTCTTCTAGAAGGCATCCCAATTTAGTAGGGTTGGTGGTTGCTTCTTTGTCTCGTTTCCCAGCATTGGTAGTTCTTAACATTAGTTTCTGTAGTCTACTTCAAATTCCCGATGCCATTGGACAGTTATGTTGTTTAGAAGATTTAAACATAGGGGGAAATCTTTTTGATACGCTACCTGATTGCATCAAGGAACTTCCCAAGCTAAGGCGATTGAATTTGGAGTACTGTAATCATCTAAAGTGGTTGCCAAGTACCCATTTGCCAATAAGAGGTAGGGATGGAGGAGTGTATGTTTTCAACTGCCCCAATTTAAGTGACACGGAAGGTTGTCGTCTCACAGCTATTTCATGGATGATAAATATGATTCAGGTGAACATGCAATGCTCTTTCCCCGAATACATCGTCACTGTTGTTATTCCAGGAACTAAAATTCCAAGGTGGTTCAGCAAACAAAATACGGGTGATTCAGTGAGGTTGGATCCATCTCCAATTCTGGATGACAATAATTGGATTGGAATTGCTTGTTGTGTAACATTTGTTGTGCATGATACTCCAACTCAATTTCTTGAAGAAGAGATATATTCTCCCTCTCTAGTTAGTTGTGGTTTTCGTCGTAATGGGTATGGGGGCATTTTTTGCCAAGTTCCAATACGTTTTAAGAAGGATTATATCACAACTGAATTAGATCATATGTTGCTAATGTTTTTCTCCCGGGAAGATTTCATTAATCATTATATGAGTGAATTAAAAGCAGGAGAATCTGATCTTCAAGTTATTGAAATGGCCTTGGCCACTAAGAGTGATTATCCAGAAGAGGTAGTAGAATTGAAGAGTTGTGGTTACCATTGGGTATTTAAAGAAGATTTAGAACAATTTAACCCAACAATGATGTACACCGCCAATTCTTCACCCCAGAATCAGAAGCACAAGTTTTTGGCAATTGAAGATGATCACCGATAG 3228 0.3804 MDCMTIQSTLSHKKNWKYDVFVSFRGETRYNFTDHLFDALHRHSIRAFRDDTKLQKGGLISEGLMQAIEGSQVLIAVFSVDYASSTWCLRELAKIADCIQVTGQHVLPVFYDVSPAEVRWQSGNYEKAFLKHEERYKEDVEMMEQVRRWRRALKKVADLSGWDVKDKSQSAKIEEIVKAITSILSPKASSSLSNDIVGMHSPLEELEKLLVLGLDDDVRVVGICGMGGIGKSTLAAILYEKISHQYDASCFVDVVSKTYGDYGSLGVQKQLLCQEEDFLTYNLSLANNLIQTRLCHRKVLMVLDNVENGIQLEKLGLKREFLGRGSRIIIISRDEHMLREYGVDGVYKVQLLNYENSLQLFSRKAFKSNHVAKDYESLTKSALRYANGLPLAIRVLGSFLYGRDVCEWRSALVKLKEYPTKDIMDVLRISFNGLDHMEKEIFLDIACFFPNGSGEWHVKGILNIRGFHPDIGMRILIDKSLITRNQWGINMHDLLRELGRSIVREKSPKEPRMWSRLWNQEDLSHVLCENKPSENLEGIVLPRFLENREELSKRTTLRVEALSQMRHLKLLILGGVNFSGCLDFLSNELGYLDWEDYPFTCLPSSFQPNKLIQLILHHSNIKELWEGIKDLHNLKRMELCYSKNLVKIPNLSQAPNLEYLDFKGCVKLVHLDASIGSLEKLRYLNLENCKNLVSIPNSIFHLNSLRNLSLSGCWKLLKYQLLEKPRQSEQMSRGQSVQRHMTSSICKTLTRPLHFLSSRRHPNLVGLVVASLSRFPALVVLNISFCSLLQIPDAIGQLCCLEDLNIGGNLFDTLPDCIKELPKLRRLNLEYCNHLKWLPSTHLPIRGRDGGVYVFNCPNLSDTEGCRLTAISWMINMIQVNMQCSFPEYIVTVVIPGTKIPRWFSKQNTGDSVRLDPSPILDDNNWIGIACCVTFVVHDTPTQFLEEEIYSPSLVSCGFRRNGYGGIFCQVPIRFKKDYITTELDHMLLMFFSREDFINHYMSELKAGESDLQVIEMALATKSDYPEEVVELKSCGYHWVFKEDLEQFNPTMMYTANSSPQNQKHKFLAIEDDHR 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183020g00002 1075 SUPERFAMILY L domain-like 491 840 - -
Stsc183020g00002 1075 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Stsc183020g00002 1075 Gene3D - 183 343 IPR027417 -
Stsc183020g00002 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Stsc183020g00002 1075 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 162 IPR035897 -
Stsc183020g00002 1075 Pfam Leucine rich repeat 776 835 IPR001611 GO:0005515
Stsc183020g00002 1075 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc183020g00002 1075 Gene3D - 351 435 IPR042197 -
Stsc183020g00002 1075 Gene3D - 10 182 IPR035897 -
Stsc183020g00002 1075 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 720 IPR044974 GO:0006952
Stsc183020g00002 1075 Pfam C-JID domain 895 1046 IPR045344 -
Stsc183020g00002 1075 Pfam TIR domain 17 191 IPR000157 GO:0007165
Stsc183020g00002 1075 SMART till_3 17 159 IPR000157 GO:0007165
Stsc183020g00002 1075 PRINTS Disease resistance protein signature 220 235 - -
Stsc183020g00002 1075 PRINTS Disease resistance protein signature 293 307 - -
Stsc183020g00002 1075 PRINTS Disease resistance protein signature 676 692 - -
Stsc183020g00002 1075 PRINTS Disease resistance protein signature 386 400 - -
Stsc183020g00002 1075 Gene3D Ribonuclease Inhibitor 753 867 IPR032675 -
Stsc183020g00002 1075 Gene3D Ribonuclease Inhibitor 544 742 IPR032675 -
Stsc183020g00002 1075 Pfam NB-ARC domain 203 421 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183020g00002 Stsc-Chr183020 2422 6640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183020g00002 18 827 WRKY Transcription Factor Family AT4G12020 31.333 1.35e-88 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183020g00002 - - adu:107476580 1270.76