Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183001g00001 ATGGGTAGCAGAATGGGTAAGCTCTGCGTCTGTTCCTCCGGCACCGCCGCCAGAGAAATGTCCGGCAGATTCGATATCGGCACTGCCCTCGTCTCCGATTCACATGAAAAATCTCTCGGTGACTCCATCTGCTATGTCAGACCAGACAATTCTCAGTTCTCCGCCGCCGCCGGCGACGACGTGTTTTTCCGGTCTGTCTCTGGGGCCACGGTGAGTGCAAACAAGTCATCAACGCCTTCGATCTCTCTTGATGATTCTCTTCAGCAAGAGAAAGCTTTGGATTCCTCTGCTTCGTTTGAGAGTTCTGGTTCCTTTGCTTCCACAACGATGACAACGACAATGGTGCCTCTGCAACTGCAACAACACCCAAAGAGCCCGTTGGATGATCGTGTGGTGAACGATGAAAGCGTTGTTGAGAAAGGTTATGGTTACGAACCTGCCAATAAGAAGGAGTTGCTGACGGAGAAGAAGAGACCCATTTTCAAGAATAACGGGAATGCTAACACCAGAGTGAGTTGTAGCACTAATTTGGCTGAAGAATTGAAGTTTCATGGCTATGATGATGATAAGTGTTATTTATCGTCAAAGGGATGTAATAAGAACTTTCATTGGGCTCATGGTAGAGCCGGCGAGGATCGTTTGCATATCGTAATTTGCGAGAATCATGGATGGGTTTATGTTGGGATTTACGATGGATTCAATGGTCCTGATGCGACTGATTATCTTCTGAACAATTTGTTTTATGCTGTATATGAAGAACTCAATAAGATATTGTGTAGTCAAGATTGCAAGAAAGAGGTGAAAGTGGGAATGGAAAAAATGATGGAGGGTAATGAGAATGCGAAATTGAGTGAGTGTGGTGATGTTCTGGAAGGTCTTTCGTCGGCGATGAGGACGACGGAGGAGGCGTTTCTTAAGAGGTCAGATGAGATGATTGATGAGAATCCGGTGTTGGCTATGATGGGTTCTTGTGTGTTGGTTATGTTGATGAAAAGGGAAGATGTGTACTTGATGAATGTTGGAGATAGCCGTGCTGTGTTAGCAACCCACAATGGGAATTCTCTTCAGCTTACAATGGACCATAGCACTCATGTTAAAGAGGAGGTTCGTAGAATATTGAGGGAGCACCCAGATGACCCTTCTGCTGTAACTAAGGGAAGGGTCAAAGGTCACTTGAATGTCACAAGGGCTTTTGGGGTTGGCTTCCTTAAGCAGCCTAAACAAAACAATGCAATGTTAGAGACATTCAAAGTGAAGTACATTGGAGAGTCCCCATACATTACATGCTGCCCATCACTCCACCACCATAGACTCACTCCAAATGACAAATTCCTCTTACTCTCTTCTGATGGACTTTTCCAATACTTCACCAACGAAGAAGCACTTTCCAAAGTAGAATACTTCGTTGGTATGTTCCCAGATAGAGATCCTGCACAACTTCTCATTGAAGAAGCGCTGAACAGAGCAGCCAATAAAGCTGGTATGAATTTGAATGAGTTGCTTGATATCCCACAAGGAGAAAGACGACTTTACCATGATGACATTTCTATTGTCATCATCTCTTTGGAGGGAAAAATATGGCGTTCATTAGTGTAA 1596 0.4449 MGSRMGKLCVCSSGTAAREMSGRFDIGTALVSDSHEKSLGDSICYVRPDNSQFSAAAGDDVFFRSVSGATVSANKSSTPSISLDDSLQQEKALDSSASFESSGSFASTTMTTTMVPLQLQQHPKSPLDDRVVNDESVVEKGYGYEPANKKELLTEKKRPIFKNNGNANTRVSCSTNLAEELKFHGYDDDKCYLSSKGCNKNFHWAHGRAGEDRLHIVICENHGWVYVGIYDGFNGPDATDYLLNNLFYAVYEELNKILCSQDCKKEVKVGMEKMMEGNENAKLSECGDVLEGLSSAMRTTEEAFLKRSDEMIDENPVLAMMGSCVLVMLMKREDVYLMNVGDSRAVLATHNGNSLQLTMDHSTHVKEEVRRILREHPDDPSAVTKGRVKGHLNVTRAFGVGFLKQPKQNNAMLETFKVKYIGESPYITCCPSLHHHRLTPNDKFLLLSSDGLFQYFTNEEALSKVEYFVGMFPDRDPAQLLIEEALNRAANKAGMNLNELLDIPQGERRLYHDDISIVIISLEGKIWRSLV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183001g00001 531 SUPERFAMILY PP2C-like 208 523 IPR036457 -
Stsc183001g00001 531 Pfam Protein phosphatase 2C 298 490 IPR001932 -
Stsc183001g00001 531 Gene3D - 187 528 IPR036457 -
Stsc183001g00001 531 ProSiteProfiles PPM-type phosphatase domain profile. 190 522 IPR001932 -
Stsc183001g00001 531 CDD PP2Cc 190 522 IPR001932 -
Stsc183001g00001 531 SMART PP2C_4 195 520 IPR001932 -
Stsc183001g00001 531 PANTHER PROTEIN PHOSPHATASE 2C 172 520 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183001g00001 Stsc-Chr183001 1926 7354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183001g00001 1 531 PP2C-type Phosphatase Gene Family AT2G28890 41.629 7.47e-152 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183001g00001 - K01102 gmx:100804061 634.409