Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182988g00001 ATGGGCGTGGGAGAAGGAGACAGCACAAAACCCGAACCCAAACCCGAATCCAATGATGGTCATCGCAACCAAGAAGAAGACGAAGACGACGACGTGGAAGGAGAAGAAGAAGAAGGCTTGTCCGACTCAAGAACAGGTATGGCATTGGGTCTGTCAGCGAAAGTGAAAGGGCAGAGACAGAGGCAGCAGCCACCGGAGTGGGCGGTGGTGCAGCAGGTGTCGGAGAAGCTGGTTAGCGGCAGCCTTCAGTGGAAGATAGAGGCTGCCAGGGAGATCCGCAAGCTCGTCAGGAAATCGCCTTCCTCTGCCAAGACGAGGTCCAGGCTGGGCGCCGCTGGAGTTGTCCAGCCTCTCGTCTTCATGCTGTCGTCATCAAACCCCGATGCACGTCACTCCTCCCTCCTCGCTCTCCTCAACCTCGCCGTCCGCAACGAACGGAATAAGGTCAAAATAGTGACAGCTGGTGCTATCCCTCCTCTGGTGGAGTTCCTCAAGACGGAAAATAGTAGCATAAGGGAATTAGCGACAGCGGCAATCTTGACACTCTCAGCTGCAGCTCCCAATAAGCCCATAATTGCTGCTTCTGGAGCTGCGCCTCTGCTTGTTCAGATCCTCAACTCCGGAAGTGTTCAAGGCAGAGTTGATGCGGTTACAGCCCTCTATAATCTCTCCACCAGCATCGAGAAGAATTCTACCAATCTCCTGGATGCTGGTGCTGTTTCTCCTCTCATCAACCTCCTTAAAGAGTGCAAGAAATACTCCAAGTTTGCAGAAAAAGCTACGGCACTACTTGAAATCCTCTCCAACTCTGAAGAAGGACGAACTGCAATCTCAGTTGCAGACGGCGGAATTTTAACCTTAGTAGAGACCGTTGAAGATGGATCGCTGGTCAGCACACAACATGCCGTTGGAACCCTGCTGTCGTTGTGTCTAAGCTGCCGAGACAAATACCGGGAACTTATCCTCAAAGAAGGAGCAATCCCGGGTCTGTTACGGCTTACGGTGGAGGGCACAGCAGAAGCACAAGATAGAGCTCGTTTGCTTCTGGATTTGCTTAGAGATTCTCCCCCGGAAAGAAGACTAGTCTCCTCAGTTTTGGAGAAAATCGTTTATGACATCGCCGAACGTGTAGATGGAGTAGACAAAGCTGCTGAAACAGCCAAAAGGTTATTACAAGACATGGTTCAGAGGAGTATGGAACAAAGCTTGAACTGCATTCAGCATAGAGCAGCATCTTGTAATCCTTCTGTGATTCCTTCCACTTGA 1266 0.5103 MGVGEGDSTKPEPKPESNDGHRNQEEDEDDDVEGEEEEGLSDSRTGMALGLSAKVKGQRQRQQPPEWAVVQQVSEKLVSGSLQWKIEAAREIRKLVRKSPSSAKTRSRLGAAGVVQPLVFMLSSSNPDARHSSLLALLNLAVRNERNKVKIVTAGAIPPLVEFLKTENSSIRELATAAILTLSAAAPNKPIIAASGAAPLLVQILNSGSVQGRVDAVTALYNLSTSIEKNSTNLLDAGAVSPLINLLKECKKYSKFAEKATALLEILSNSEEGRTAISVADGGILTLVETVEDGSLVSTQHAVGTLLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARLLLDLLRDSPPERRLVSSVLEKIVYDIAERVDGVDKAAETAKRLLQDMVQRSMEQSLNCIQHRAASCNPSVIPST 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182988g00001 421 MobiDBLite consensus disorder prediction 23 38 - -
Stsc182988g00001 421 PANTHER U BOX DOMAIN-CONTAINING 52 354 - -
Stsc182988g00001 421 Gene3D - 69 192 IPR011989 -
Stsc182988g00001 421 Pfam Armadillo/beta-catenin-like repeat 144 183 IPR000225 GO:0005515
Stsc182988g00001 421 Pfam Armadillo/beta-catenin-like repeat 187 224 IPR000225 GO:0005515
Stsc182988g00001 421 SUPERFAMILY ARM repeat 71 397 IPR016024 -
Stsc182988g00001 421 Gene3D - 193 404 IPR011989 -
Stsc182988g00001 421 MobiDBLite consensus disorder prediction 1 66 - -
Stsc182988g00001 421 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Stsc182988g00001 421 FunFam U-box domain-containing protein 4 53 412 - -
Stsc182988g00001 421 SMART arm_5 143 184 IPR000225 GO:0005515
Stsc182988g00001 421 SMART arm_5 270 311 IPR000225 GO:0005515
Stsc182988g00001 421 SMART arm_5 226 269 IPR000225 GO:0005515
Stsc182988g00001 421 SMART arm_5 102 142 IPR000225 GO:0005515
Stsc182988g00001 421 SMART arm_5 185 225 IPR000225 GO:0005515
Stsc182988g00001 421 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 282 IPR000225 GO:0005515
Stsc182988g00001 421 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 155 197 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182988g00001 Stsc-Chr182988 5243 8158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182988g00001 75 359 U-box Gene Family AT3G54790 39.860 3.21e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182988g00001 K08332 - gmx:100782472 533.487