Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182986g00001 ATGTTCTGTTACGGCCTCCTCGACGAGACTCAGAACAAGCTCGATTACGTCCTCGCTCTCACCGTCGAGCACTTCCTTGAGCGCCGCCTCTTGACTCTCATCTTCAAGTCCGGCATGGCCAAGTCCATCCATCACGCCAAGGTTCTCATCCGCCAGCGCCACATTAGCTACTGTTTCCAAAGGAAATCCCTTGATATTGAAGACACCTTGTTTGGGTGCCAAGTATCAAACCTTCAGGTGGCAGAACATATGGCAGTCATGGCCAAGAATCCTGATCTTTCATATTGTAAAATAGTGGAGCACAACACTTTATGGATGGAAGAGAAGAAAAATTGCTTGTGCAATGAAGGCCTTTAA 357 0.4762 MFCYGLLDETQNKLDYVLALTVEHFLERRLLTLIFKSGMAKSIHHAKVLIRQRHISYCFQRKSLDIEDTLFGCQVSNLQVAEHMAVMAKNPDLSYCKIVEHNTLWMEEKKNCLCNEGL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182986g00001 118 ProSitePatterns Ribosomal protein S4 signature. 26 50 IPR018079 GO:0019843
Stsc182986g00001 118 Pfam S4 domain 28 55 IPR002942 GO:0003723
Stsc182986g00001 118 Gene3D - 27 71 IPR036986 GO:0003723
Stsc182986g00001 118 PANTHER 30S 40S RIBOSOMAL PROTEIN 4 57 IPR022801 GO:0003735|GO:0015935|GO:0019843
Stsc182986g00001 118 CDD S4 28 55 - -
Stsc182986g00001 118 SUPERFAMILY Alpha-L RNA-binding motif 12 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182986g00001 Stsc-Chr182986 4639 5835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182986g00001 4 58 Cytoplasmic Ribosomal Protein Gene Family AT5G15200 85.455 1.92e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182986g00001 K02997 - lja:Lj0g3v0080839.1 101.679