Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182979g00001 ACAGTGGTAGATCAGAACAAGCGGGAAAATGGTAACAACAATAATAACGGTGGTTCGGGGGCAGCAGCGGCAGCGGTTGTGGTGAGTTCACGGTGGAATCCGACGCCGGAGCAGCTGAGGGCGCTTGAGGAGCTGTATAGAAGAGGGACTCGGACGCCGTCGGCGGAGCAAATCCAACACATAACGGCGCAGCTGAGAAGGTTTGGGAAGATTGAAGGCAAGAATGTGTTCTATTGGTTTCAGAATCACAAGGCTAGGGAGAGGCAAAAGCGTCGCCGCCAGATGGAATCTTCTGATAATAATAACAACAACAACAATCACAATCATAACAATCATATTCCCAATCATCAACTTCAAACCCACAACAACAACAGCAATCATCACCACCACCGTGATTTTGATGCTTCTTCTGAAAAGAAAGAACTAGGAGGAAGTAGGACAGTGGTTGAAGTTGAACAGAGCAAGAACAACTGGGTATCCTCTACAAACTGCACTACTACTACTCTTGCAGAGGAATCTATTTCAATGGAAAGAGGGGGAGTAGCAGGAAAAGCAGTGGGATCAGAGTGTAGAGCAGATGGATGGGTCCAATTCGAAGAAGGGGAATTACAACAAAGAAGGAACTTTATGGAAAGGAATGCCACGTGGCACATGATGATGCATCATCACTCCCCATGTGCTCCTGCTGCACCACCTGCACCTGCACCACCTGTCACATACCTCATAAATAACCCTCCTTCCTCTTCTTCTTCTCCTCATCTTCTTCCTATTCATCTTCCTCTTCAAATCGACCCATCAAAGCTCATTAATAACCACCACCATGATCTTGGCTTCTTTATTTCAACTCATCATCATGAACATGATGTTGATGTTGAACTACTAGAATCTCATCATCATCAGAATAATGAGAATGAGAATGAGAATCAAACCCTTCAACTATTCCCTCTAAGGAGTGGTGGTGGTGGTGAAGGTGAAGAAGGTGACGATGTTAATCATCACATTAATGGAAAAGGGACAGAGATATCAGCATCAAGTGATGCCAATAACTTGATGATGATGATGACACCAAATAACCACCATCGCTTCTTTGAGTTCCTCCCTTTGAAGAACAACAACAACTAA 1122 0.4456 TVVDQNKRENGNNNNNGGSGAAAAAVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESSDNNNNNNNHNHNNHIPNHQLQTHNNNSNHHHHRDFDASSEKKELGGSRTVVEVEQSKNNWVSSTNCTTTTLAEESISMERGGVAGKAVGSECRADGWVQFEEGELQQRRNFMERNATWHMMMHHHSPCAPAAPPAPAPPVTYLINNPPSSSSSPHLLPIHLPLQIDPSKLINNHHHDLGFFISTHHHEHDVDVELLESHHHQNNENENENQTLQLFPLRSGGGGEGEEGDDVNHHINGKGTEISASSDANNLMMMMTPNNHHRFFEFLPLKNNNN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182979g00001 373 MobiDBLite consensus disorder prediction 98 122 - -
Stsc182979g00001 373 MobiDBLite consensus disorder prediction 83 147 - -
Stsc182979g00001 373 MobiDBLite consensus disorder prediction 299 345 - -
Stsc182979g00001 373 MobiDBLite consensus disorder prediction 1 20 - -
Stsc182979g00001 373 FunFam WUSCHEL-related homeobox 4 29 96 - -
Stsc182979g00001 373 CDD homeodomain 31 91 IPR001356 GO:0003677
Stsc182979g00001 373 MobiDBLite consensus disorder prediction 1 22 - -
Stsc182979g00001 373 SUPERFAMILY Homeodomain-like 30 95 IPR009057 -
Stsc182979g00001 373 ProSiteProfiles 'Homeobox' domain profile. 35 90 IPR001356 GO:0003677
Stsc182979g00001 373 SMART HOX_1 27 94 IPR001356 GO:0003677
Stsc182979g00001 373 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 11 347 IPR044555 GO:0003700|GO:0099402
Stsc182979g00001 373 MobiDBLite consensus disorder prediction 125 146 - -
Stsc182979g00001 373 Gene3D - 28 90 - -
Stsc182979g00001 373 Pfam Homeodomain 30 89 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182979g00001 Stsc-Chr182979 2261 4724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182979g00001 2 370 Wox Gene Family AT3G18010 36.719 6.28e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc182979g00001 Homeodomain 1.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182979g00001 - - adu:107490490 417.157