Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182924g00001 ATGCCAATGGCGCTAGTTACTCTCCTCTGCTCTCCTTCAATAGTAAACTACCCCACACAACACCCTCTTCACAATCCTCGTTACTTCTCTTCCCATCATTATTCCATCAACAGCATCTGTTCCTTCTTGCACACACCTTACTCTAGAAGATCAAAATTAAGCACTAATAACTTCACTCTCACATTTGCCTCTGATTCTCTCCCATCATCACTTGTTTCCACTGATGAAGAAAAAGAAGAACCCAAGGTTGAGGAGTTTTCAAGAACAAGGATCATTGCTCAGAATATTCCTTTTTCTAGTACCCAAGATGATATTCGCGCTTTGTTTGAGAGGCATGGAAGGGTCCTCCATGTTGAGCTTTCCATGCATACCAAGACAAGGAACAGGGGTCTAGCATTTGTGGAAATGGGTTCCCCAGAAGATGCTCTTGAAGCTCTTAACAATCTCGAATCGTATGAGTTTGAGGGTCGCATGCTGAATCTAGAATATGCTCGGCCAAAAAAGAAGAAAAGTCCTCCTTCTTTGCAACCAAAACCAGCAGTGACATATAACTTGTTTGTTTCAAATTTTCCCTATGAAACAAGGGCTAAGGATCTGAGAGAGTTTTTTAATTCAGGAAATGGTAGTGTTGTTTCTGCAGAGGTTATATTCTATGATAAGCCTAGAAAGTCTGCTGGTTATGGATTTGTGTCCTTTGAGTCTGAGCAAGAAGCTCAGCAAGCGCTTTCGGAGTTCCAAGGAAAGATTTTTATGGGACGGCCTCTTCGGGTGGCTCGAGGCAGACAATTTGTTAAACAAGTAGTAGTTGAGCAGAGTGCTGCAAAAGTGGATAATGCGGATTGA 843 0.4223 MPMALVTLLCSPSIVNYPTQHPLHNPRYFSSHHYSINSICSFLHTPYSRRSKLSTNNFTLTFASDSLPSSLVSTDEEKEEPKVEEFSRTRIIAQNIPFSSTQDDIRALFERHGRVLHVELSMHTKTRNRGLAFVEMGSPEDALEALNNLESYEFEGRMLNLEYARPKKKKSPPSLQPKPAVTYNLFVSNFPYETRAKDLREFFNSGNGSVVSAEVIFYDKPRKSAGYGFVSFESEQEAQQALSEFQGKIFMGRPLRVARGRQFVKQVVVEQSAAKVDNAD 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182924g00001 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Stsc182924g00001 280 SMART rrm1_1 184 258 IPR000504 GO:0003723
Stsc182924g00001 280 SMART rrm1_1 90 162 IPR000504 GO:0003723
Stsc182924g00001 280 Gene3D - 171 266 IPR012677 -
Stsc182924g00001 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 158 IPR000504 GO:0003723
Stsc182924g00001 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 256 IPR000504 GO:0003723
Stsc182924g00001 280 CDD RRM_SF 185 257 - -
Stsc182924g00001 280 Gene3D - 62 170 IPR012677 -
Stsc182924g00001 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Stsc182924g00001 280 PANTHER OS02G0815200 PROTEIN 27 259 - -
Stsc182924g00001 280 CDD RRM_SF 95 162 - -
Stsc182924g00001 280 SUPERFAMILY RNA-binding domain, RBD 89 259 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182924g00001 Stsc-Chr182924 7430 10179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182924g00001 91 262 Eukaryotic Initiation Factors Gene Family AT2G36660 25.581 6.29e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182924g00001 - - qsa:O6P43_015341 276.944