Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182922g00002 ATGTCTCGGCCGCTACTTGGCGTGGTCGGGGATGAGGAAGGCCAGGAGAGCCATGTGACTCTCTTGGTATCTTCCTCATCCACCATGGAAAGTGTGAATTGTCTGAACAGCACAAAACTGAAGGAGCGAAACTACATGGGATTGTCTGATTGTTCTTCTGTGGACAGCTCTGTTCCGTCGTTCTCAGATGAGACTAAAAGCAATCTGAACCTCAAAGCTACTGAGCTGAGGCTGGGGCTTCCGGGATGTCAGTCTCCTGAAAGAGACTCGGATCTTTGCTTGAGGAGTTCAACTCAATTCGATGAGAAACCTTTGTTTCCTTTGCGTCCTGCGACGGATGATCACCATTCCTCTTCGAAGCCTGCTGTTTTGGGCAACAAAAGAGGGTTCTCGGATGCAATGAACGGGTTCTCTGAGGAAAAATTGCTTGTTAGTTCGGACGCCAATTCAATATTGCAATCTAGGCCTTCACCTAACGTGGGATTGAAATCAAGTATGCTTGAGAATGCCGCAGCACAGCAAACCAAAGCCAAAGAAGTAGCAACATCCAAGTTGGGACTTGATAGGCCTCATGCTGACAATGAAAGCAGGCCAAGCCTTAACGACTCCGCTGTGAATAATAATAGCAGTGCACCAGCTCCAAAGGCACAGGTTGTAGGATGGCCTCCTATAAGATCATTTAGGAAAAATTCATTGGCTACTACTTCGAAGAATGCTGAAGAAGTAGATGGGAAAATGGCTTCTGGTGCACTGTTTGTGAAGGTAAGTATGGATGGAGCACCATACTTAAGAAAAGTGGACTTGAAGAATTACTCTGCGTATCCGGAACTTTCTTCTTCTCTGGAGAAGATGTTCAGCTGCTTCACCATAGGTCAATGTGGATCTCATGGAAATCTTGGTAAGGAGATGATGAGTGAAACCAAGCTGAAGGATCTGCTTCATGGATCAGAATATGTTCTTACTTATGAGGATAAAGACGGCGACTGGATGCTAGTGGGTGATGTTCCCTGGGAAATGTTTATTGAAACATGCAGGAGGCTGAGGATCATGAAGGGCGCTGATGCCATTGGACTAGCTCCAAGAGCCGTTGAGAAAAGCAAAAGCAGGAACTAG 1113 0.4627 MSRPLLGVVGDEEGQESHVTLLVSSSSTMESVNCLNSTKLKERNYMGLSDCSSVDSSVPSFSDETKSNLNLKATELRLGLPGCQSPERDSDLCLRSSTQFDEKPLFPLRPATDDHHSSSKPAVLGNKRGFSDAMNGFSEEKLLVSSDANSILQSRPSPNVGLKSSMLENAAAQQTKAKEVATSKLGLDRPHADNESRPSLNDSAVNNNSSAPAPKAQVVGWPPIRSFRKNSLATTSKNAEEVDGKMASGALFVKVSMDGAPYLRKVDLKNYSAYPELSSSLEKMFSCFTIGQCGSHGNLGKEMMSETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCRRLRIMKGADAIGLAPRAVEKSKSRN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182922g00002 370 SUPERFAMILY CAD & PB1 domains 246 351 - -
Stsc182922g00002 370 MobiDBLite consensus disorder prediction 197 214 - -
Stsc182922g00002 370 MobiDBLite consensus disorder prediction 168 220 - -
Stsc182922g00002 370 MobiDBLite consensus disorder prediction 182 196 - -
Stsc182922g00002 370 Pfam AUX/IAA family 74 361 IPR033389 -
Stsc182922g00002 370 Gene3D - 245 364 - -
Stsc182922g00002 370 ProSiteProfiles PB1 domain profile. 250 352 IPR000270 GO:0005515
Stsc182922g00002 370 FunFam Auxin-responsive protein 245 362 - -
Stsc182922g00002 370 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 356 IPR003311 GO:0005634|GO:0006355
Stsc182922g00002 370 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182922g00002 Stsc-Chr182922 4221 8278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182922g00002 264 355 B3 DNA Binding Superfamily AT1G19220 30.435 9.43e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc182922g00002 AUX_IAA 1.7e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182922g00002 K14484 - gmx:100815447 587.415