Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182911g00001 ATGAAAATCGCCATTGAAACTGCTTCTGCATTGGCCTATCTCCATGCTTGCGGTATCATCCACCGTGACTTGAAAACCAGGAACATTCTGCTTGACAACAACTTCGGTGTTAAGGTTGCTGATTTCGGGCTTTCTAGATTGTTCCCTAATAATGTCTCACATGTCTCGACGGCGCCGCGGGGAACCCCGGGTTATGTTGATCCAGAGTATCGTTTGTGCTATCAACTTACAAACAAGAGTGATGTGTATAGTTTCGGAGTCGTTCTTGTTGAGCTGATATCGTCTCTGCCGGCGGTTGATATGAATAGGGAAAGGGATTATATTAAGTTGGCAAATGTAGCTGGAGAGAAGGACTTGAGACCGTCTATGGCAGAGGTATTAGAGGCGCTGCAGAGGATTGAAATTGGTAGGGAAGAGGCAGAGAATTTTGAAGGTAAAGAGGTTTTGCGTGCTAGTGTTTCAATGAATTATGCTGCAGCTCAAAACTCTTTGATGAATGGCAAGTGCCATCTCCAAACATTTTGA 525 0.4457 MKIAIETASALAYLHACGIIHRDLKTRNILLDNNFGVKVADFGLSRLFPNNVSHVSTAPRGTPGYVDPEYRLCYQLTNKSDVYSFGVVLVELISSLPAVDMNRERDYIKLANVAGEKDLRPSMAEVLEALQRIEIGREEAENFEGKEVLRASVSMNYAAAQNSLMNGKCHLQTF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182911g00001 174 ProSitePatterns Serine/Threonine protein kinases active-site signature. 19 31 IPR008271 GO:0004672|GO:0006468
Stsc182911g00001 174 SUPERFAMILY Protein kinase-like (PK-like) 2 139 IPR011009 -
Stsc182911g00001 174 ProSiteProfiles Protein kinase domain profile. 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182911g00001 174 SMART serkin_6 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182911g00001 174 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 115 IPR044652 GO:0004672
Stsc182911g00001 174 Pfam Protein kinase domain 2 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182911g00001 174 Gene3D Transferase(Phosphotransferase) domain 1 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182911g00001 Stsc-Chr182911 1499 2146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182911g00001 1 117 Receptor kinase-like Gene Family AT1G25390 75.214 6.44e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc182911g00001 Pkinase 1.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182911g00001 - - ahf:112802646 251.906