Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182898g00001 ATGTCTATGTCTATGGCTATGTTTCACTATTTGGTTCCTTTGGCCATTTTAATGTCTACCTTTGTGCAAGCCATTTCAAGTGGCATTGATGGCAATTGGTATGATGCTCATGCAACATTCTACGGTGACATGAAAGGTGGAGAAACCATGCAGGGTGCATGCGGCTATGGCGATTTATTCGAACAAGGGTATGGACTTGAAACCACAGCACTAAGCACTGCTCTATTCAACAATGGACTAACTTGTGGTGCATGTTATGAGATCAAATGTGTGAATGATCCACAATGGTGCATTAAGGGTGCAGGAACAATTAAAGTAACAGCAACAAACTTTTGTCCTCCAAATTTTGTTGATGGAGGTTGGTGTAATCCTCCAAAAAAGCACTTCGATTTGTCCATGAAGATGTTCACAACCATAGCAATCTACAAAGCAGGGATAATCCCAGTTAGTTATAGGCGTATTCCATGCATTAAAAAAGGTGGTGTCAAGTTTGAGTTGAAGGGTAACCCTAATTGGTTGCTAGTGTTGGTTTATAATGTTGCAAATGCTGGTGATGTTACAAGCGTTAGCATCTCAGGTTCAAAGACAGGTGGGTGGATTTCTATGTCACGTAACTGGGGGCAAAATTGGCAAACTGGCACTAATTTGGTTGGACAAAGTTTGTCTTTTAAGGTTACAACAAGTGATGGGAAAACGTTGTTGTTTAGTAATGTTGCTAATTCCAATTGGCAATTTGGACAAAGTTTTGAGGCCTCCAACAACTTTTAG 768 0.4036 MSMSMAMFHYLVPLAILMSTFVQAISSGIDGNWYDAHATFYGDMKGGETMQGACGYGDLFEQGYGLETTALSTALFNNGLTCGACYEIKCVNDPQWCIKGAGTIKVTATNFCPPNFVDGGWCNPPKKHFDLSMKMFTTIAIYKAGIIPVSYRRIPCIKKGGVKFELKGNPNWLLVLVYNVANAGDVTSVSISGSKTGGWISMSRNWGQNWQTGTNLVGQSLSFKVTTSDGKTLLFSNVANSNWQFGQSFEASNNF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182898g00001 255 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Stsc182898g00001 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Stsc182898g00001 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Stsc182898g00001 255 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Stsc182898g00001 255 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Stsc182898g00001 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Stsc182898g00001 255 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Stsc182898g00001 255 SMART dpbb_1 68 151 IPR007112 -
Stsc182898g00001 255 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Stsc182898g00001 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Stsc182898g00001 255 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Stsc182898g00001 255 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Stsc182898g00001 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Stsc182898g00001 255 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Stsc182898g00001 255 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Stsc182898g00001 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Stsc182898g00001 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Stsc182898g00001 255 CDD DPBB_EXPA_N 33 156 - -
Stsc182898g00001 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 161 IPR007112 -
Stsc182898g00001 255 Gene3D - 19 156 IPR036908 -
Stsc182898g00001 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 251 IPR007117 -
Stsc182898g00001 255 Gene3D - 160 255 IPR036749 -
Stsc182898g00001 255 PANTHER EXPANSIN-A15 19 253 IPR002963 GO:0009664
Stsc182898g00001 255 SUPERFAMILY Barwin-like endoglucanases 32 179 IPR036908 -
Stsc182898g00001 255 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Stsc182898g00001 255 Pfam Lytic transglycolase 68 151 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182898g00001 Stsc-Chr182898 5229 6220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182898g00001 22 255 Expansin Gene Family AT5G39300 64.831 2.01e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182898g00001 - - gsj:114422475 392.504