Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182876g00004 ATGGGTGAAGAATTGAGCTATTGTGAGAATGTTCGTGCATGGTTCTCAAGATCAAAGGCATTTTTGCTAATACTAAGCTTGCAATTTGGGTCTGCGGGCATGTACATTATTACCATGGATGCTCTAAACAAGGGAATGAGTCATTATGTCTTTGTTGTTTATCGCAATGTCGTTGCCACTGTCGCTCTTGGCCCCTTCGCTTTTTTCCTTGAAAGGAAAGTTAGGCCCAAGATGACACCTCGGATTTTTGCAGAGATTTTGGCACTGGCTTTTATAGAGATCATACTTGATCAATGCTTCACCTTCTTGGGAATGAAATTAACTTCAGCATCTTTTGCATCTGCTGTGATGAATTCCGTACCCTCCATAACCTTTGTGCTGGCAATCATTTTTAGATTGGAACGCATGAAGATTAGGAACATAGGATGCCAAGCGAAAGTGATTGGCACTGCGGTAAGTCTTGGAGGTGCTATTCTAATGGCAATGTACAAAGGTCCTATTCTTAACATTGTGACGTCATCAACAACCCATGTGGCACACACTGGGAATAATGCTAACACCACTTCTGACCACTGGCTCATGGGTGCAATCTTCATCCTTATTGGCTGTGCTGGCTTCTCTGGTTTCTACATTTTGCAAGCAATAACATTGAGAAAGTACCCAGCAGAGATGTCCCTAGCCACGTGGGTATGCTTTATTGGTGCAATTCAAAGCAGTGCAGTAACTGCTTACATGGAGCGTGGTTCCCCTCAAGTCTGGGTTGTGGCTCCTGATTCCAGGCTTCTTGCCTGTTTATATGCGGGAGTAGTAACATCAGCAATTCAGTTCTATGTGCAAGGACTGGTGATTAAAACAACAGGTCCAGTATTTGTGACTGCTTTCAATCCCCTGCGTATGATCATAGTCACAGCCTTGGCATCCATACTCCTCTCTGAGAAGCTCTACCTGGGAAGTGTTATTGGAGGAGTAGTGGTGGTTGTAGGGCTTTATTTGGTTGTGTGGGGAAAATCTAAAGAAAAGGAAAGTGTCAAGAATGCTACAATGCTGCTGCCACCATCCCCTGAAAAAGATATCCAACAACCACAGCTACCAGTTACTGTTCCAAGAAATTATGATGCCAGCAACATCAACAATAATAATAACAATGATGGTGATGATAACTGTCAACAAGTGATGGTCGTAGTTGGAATCAAGAACAGCAACGTTGAAGCAAGCAGATCATCAAGTACTACTGATTGA 1239 0.431 MGEELSYCENVRAWFSRSKAFLLILSLQFGSAGMYIITMDALNKGMSHYVFVVYRNVVATVALGPFAFFLERKVRPKMTPRIFAEILALAFIEIILDQCFTFLGMKLTSASFASAVMNSVPSITFVLAIIFRLERMKIRNIGCQAKVIGTAVSLGGAILMAMYKGPILNIVTSSTTHVAHTGNNANTTSDHWLMGAIFILIGCAGFSGFYILQAITLRKYPAEMSLATWVCFIGAIQSSAVTAYMERGSPQVWVVAPDSRLLACLYAGVVTSAIQFYVQGLVIKTTGPVFVTAFNPLRMIIVTALASILLSEKLYLGSVIGGVVVVVGLYLVVWGKSKEKESVKNATMLLPPSPEKDIQQPQLPVTVPRNYDASNINNNNNNDGDDNCQQVMVVVGIKNSNVEASRSSSTTD 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182876g00004 412 PANTHER WAT1-RELATED PROTEIN 20 344 IPR030184 GO:0016020|GO:0022857
Stsc182876g00004 412 Pfam EamA-like transporter family 194 333 IPR000620 GO:0016020
Stsc182876g00004 412 Pfam EamA-like transporter family 31 160 IPR000620 GO:0016020
Stsc182876g00004 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 339 - -
Stsc182876g00004 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 54 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182876g00004 Stsc-Chr182876 6379 11610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182876g00004 12 366 Nodulin-like Gene Family AT2G37460 47.042 1.81e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182876g00004 - - gmx:100813852 529.635