Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182858g00004 ATGCGTCAATTCTTCAGAGAGTGCACAATTTCCGGCACAGTCGATTTCATCTTTGGCGACGCAACCGCTATCTTTCAAAAATGCAATATACTTGTTAAAAAAGGGTTACAGAATCAAAAGAATACAGTCACCGCACATGGTAGAAAAGATCCTAACGAACCAACAGGGTTCTCGTTACAATTCTGTAACGTAACTGCTGATTCTGACCTCGTTTCTTTCGCTAACACTACTGAATCTTTCTTGGGGAGGCCGTGGAAAATATATTCAAGAACGATTTTTATGCAAAATTATATAAGCGACGTTATAAGGCCTCAAGGGTGGTTAGAGTGGAACGGCAACTTTGCTTTAGACACATTATATTATGCTGAGTATATGAACACGGGTGCCGGTGCCGGTGTAGCTAACAGAGTCAAATGGTCCGGATACCATGTTTTGAATAGTTCAAATGAAGCCAATAATTTTACTGTGGCACAGTTCATTGAAGGAAATTTATGGTTGCCTTCAACGGGTGTAGCATTCACAGCTGGATTAACGGTTTAA 540 0.4056 MRQFFRECTISGTVDFIFGDATAIFQKCNILVKKGLQNQKNTVTAHGRKDPNEPTGFSLQFCNVTADSDLVSFANTTESFLGRPWKIYSRTIFMQNYISDVIRPQGWLEWNGNFALDTLYYAEYMNTGAGAGVANRVKWSGYHVLNSSNEANNFTVAQFIEGNLWLPSTGVAFTAGLTV 179
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc182858g00004 179 PANTHER PECTINESTERASE 2 167 - -
Stsc182858g00004 179 SUPERFAMILY Pectin lyase-like 2 176 IPR011050 -
Stsc182858g00004 179 Pfam Pectinesterase 1 163 IPR000070 GO:0030599|GO:0042545
Stsc182858g00004 179 ProSitePatterns Pectinesterase signature 2. 10 19 IPR033131 -
Stsc182858g00004 179 Gene3D - 1 177 IPR012334 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc182858g00004 Stsc-Chr182858 11599 12657 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182858g00004 1 177 Carbohydrate Esterase AT3G43270 73.446 1.38e-99 295
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182858g00004 K01051 - gmx:100814987 316.62