Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182858g00003 ATGGCATTTCAAGATTTCGATGTCATCTCGGAACGTCGAAGAAATGAGCAGAAGGCAAAACTCAAGAAGAGGATCATTATCGGTGTTGTCGGTGCCGTCCTCCTTGTTGGCATAATCGGCGCAGTGTTCGTCGTGGTATTGCCAGGAAATGACAGCAGCAAAAGCAACAGCACTCCATCATCGCATTCTCCATCATCATCGTCCTCGTCGTACTCATGGACACCACCTTCAATCGCGAAAAATGAGAAGATGGTGGAACTTGTGTGCGATGGTGCCGAGTACAAGGACAAATGTGAAGAACCTCTGTCAGATGCATTGAAGAACGACCCTTCCATGACGAATCCCAAGGATATTCTGAGGTACTACGCCAAATATGCAGAGGATGCAGTTAACGCTGCCTTCGCCAAAACCGAAACACTCAAGTTCGAATCCCCAGAGGAGCAAGGAGCCTATGAAGATTGCAAGGAGCTCTTCGCTGATGCCAAGACCGACCTAGAGGCCATCACAAGCGGAATATCTGGTGACAACATTGATTTGAGGAACATCACCAAAAGCACTCCTGATTTGAACAGCTGGCTCAGTGCTGTCATCAGTTACCAACAAACTTGCATCGACGGTTTTCCTGAGGGACAGATGAAGACTGATCTTCAGAACCTCTTCAAGGACTCTAAGGAGTTTATTAGCAACACACTTAACATTCTTTCCAAGGTTGGTAATTTGCTCTCCTCCTTTTCCATCCCCCGAAGTTTGGCCGAGGAACCCCTCGATTTCTTGGACAAAAGCGATGGCTTTCCCAACTGGCTTAGCCAGAAGGACAGGAGGATGTTGAAGGCTGCTGATAACAAGCCTAAAGCTAATGTCACCGTTGCCAAGGATGGCTCCGGGGACTTCAAAACCATCTCTGAAGCTTTGGCTGCCATGCCTAAGACATACGAAGGAAGGTATGTGATTTTTGTTAAGGAAGGTGTGTACGATGAGACAGTGACAATAACACAGAAAATGCAGAATGTAACCTTGTTTGGTGAAGGTTCACAGAAGAGCATCATCACCGGCAACAACAACTTTAGGGATGGTACCAGGACCTTCCAAACTGCCTCATTTGCTGTGCTAGGAGATGGATTTATTGGAAAGTCGATGGGATTCAGGAACACGGCAGGGCCAGAAGGACACCAAGCTGTGGCTGCGAGAGTGCAAGCAGACCGCGCAGTGTTTGTGAACTGCCGCTTTGAGGGTTACCAAGACACACTATATGCCCAAACCCACAGGCAATTCTACAGGAGTTGCATCATTTCGGGCACCATCGATTTCATCTTCGGTGACGCCGCAGCTGTTTTCCAGAATTGTATCATGCTTATTAGGAAGCCAATGGACAACCAACAAACCATTGTAACCGCACAAGGCAGAATTGATCCAAAACAAACCACTGGACTAGTCCTCCAGAAATGCACCATCAAGGCTGATGTCTCACTTGTCCCTGTCAAGGCCCAGTTCAAGAACTACCTTGGTAGGCCATGGAAGGAATACTCTAGGACAGTAGTTATGGAATCCGAGATCGGCGATGTCATTCACCCGGAGGGATGGCTTCCTTGGGCCGGCGACTTTGCTCTTAATACACTCTACTATGCTGAGTATGCTAACACTGGACCTGGTGCCAAGACCACTGAAAGGGTTAAGTGGTCCACCTACCATGTCATCAACAAGCAAGAAGCTGCCCAGTACACTGTCGCACAATTCTTGAAAGGAACTTGGGTCCAAGGCACCGGTGTTCCATCAATTCAAGGTTTCTATAACTAA 1794 0.4783 MAFQDFDVISERRRNEQKAKLKKRIIIGVVGAVLLVGIIGAVFVVVLPGNDSSKSNSTPSSHSPSSSSSSYSWTPPSIAKNEKMVELVCDGAEYKDKCEEPLSDALKNDPSMTNPKDILRYYAKYAEDAVNAAFAKTETLKFESPEEQGAYEDCKELFADAKTDLEAITSGISGDNIDLRNITKSTPDLNSWLSAVISYQQTCIDGFPEGQMKTDLQNLFKDSKEFISNTLNILSKVGNLLSSFSIPRSLAEEPLDFLDKSDGFPNWLSQKDRRMLKAADNKPKANVTVAKDGSGDFKTISEALAAMPKTYEGRYVIFVKEGVYDETVTITQKMQNVTLFGEGSQKSIITGNNNFRDGTRTFQTASFAVLGDGFIGKSMGFRNTAGPEGHQAVAARVQADRAVFVNCRFEGYQDTLYAQTHRQFYRSCIISGTIDFIFGDAAAVFQNCIMLIRKPMDNQQTIVTAQGRIDPKQTTGLVLQKCTIKADVSLVPVKAQFKNYLGRPWKEYSRTVVMESEIGDVIHPEGWLPWAGDFALNTLYYAEYANTGPGAKTTERVKWSTYHVINKQEAAQYTVAQFLKGTWVQGTGVPSIQGFYN 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182858g00003 597 SUPERFAMILY Pectin lyase-like 283 593 IPR011050 -
Stsc182858g00003 597 Gene3D - 280 595 IPR012334 -
Stsc182858g00003 597 Pfam Plant invertase/pectin methylesterase inhibitor 85 233 IPR006501 GO:0004857
Stsc182858g00003 597 FunFam Pectinesterase 280 595 - -
Stsc182858g00003 597 Pfam Pectinesterase 286 581 IPR000070 GO:0030599|GO:0042545
Stsc182858g00003 597 PANTHER PECTINESTERASE 39 585 - -
Stsc182858g00003 597 ProSitePatterns Pectinesterase signature 2. 430 439 IPR033131 -
Stsc182858g00003 597 NCBIfam pectinesterase inhibitor domain 68 236 IPR006501 GO:0004857
Stsc182858g00003 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 237 IPR035513 -
Stsc182858g00003 597 CDD PMEI-like_3 87 236 - -
Stsc182858g00003 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 237 IPR035513 -
Stsc182858g00003 597 SMART PMEI_2 80 233 IPR006501 GO:0004857
Stsc182858g00003 597 FunFam Pectinesterase 81 238 - -
Stsc182858g00003 597 MobiDBLite consensus disorder prediction 53 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182858g00003 Stsc-Chr182858 8094 10080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182858g00003 1 597 Carbohydrate Esterase AT4G33230 48.525 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182858g00003 - - gmx:100784679 791.571