Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182851g00003 ATGGCTGCAAAACTTGAAGGTGGAGCATATCTCTCTTCTTTTGTTGACGCTATTTCAGAGAAGCTGTCTTCATTACTTGAACATGACTTTGACCTCGAATTAGACAACTCTGCCCCGGAGTTGCTTCAAAGGTTGTATGATTGTCTGTGTGATGTTGCACCTGTGCTTGATGATGCTGAGCTGAAGCAGTTGAGTGACAAGAGAGTGAAGAAATGGCTTGTTGATCTCCACGATGCTCTCTATATGGTTGATGACTTGCTCGACGAACTTTCCACTAAAGCTGCCACTGCCCCTCCAAGGGATCCAGGTAATTCTTCTCCCTGGTCTCGCTTTGTTGATTCATGTATTGAAGATAGTGGTGTCAATGTCATCCAAAAAATAGTTGGCACACTAGACTCTGTTGTGAGACGAAAAGGTGTTCTTCGTCTGAAAGAGAGTGCCAAGTTGGACACATCATGGAAAATTCCATCCACATCTCTTGTTGTTAATTCTGACATATTTGGTCGGGATGAAGACAAGGAGAACATAATCAAAGTGCTGTTAGATGATACTTGCGATGCTGAATCACATGTTACTGTGATTCCCATCGTGGGTATGGGTGGGATAGGAAAAACTACTTTGGCTCAATTGGTTTACAATGATCCCAAAGTCGTGGAAAAATTTGACCCTAGAGTATGGGTGTGTGTTGCTGAAAATTCTGAACCTCTTAATCTTACAAGGACAATAATAGGGGCAATAGATTCTTCTCCCTGCAACATGGATAGTTTTGATTCACTTCAGACTAATTTGAAGAAAAAATTGATAGAAAAGACATTTTTGGTTGTTTTAGATGATGTTTGGGATGACCGACGAGACATGTGGGAGGATTTTCTAAAACCTTTTCGATATGGGAATAATGGAAGTAAGATTCTCTTAACAACTCGTAGTGAAAATGTTGCTTCTGTGTTTGTAGCTAGTAATCTACATTATCATCTAAAACTTTTGTCAAATGAAGATTGTTGGTCAGTGTTTTTGAAGCATTCATCTATTTCTACTAAACAATATGCAACACTAGAACTAATTGGTAAAGAAATTGTTAAAAAGTGTGATAGATTACCTTTGGCTGTGAAGACACTTGGTGGTTTATTGCGAAATAAGTGTAACAAAGGGGATTGGAAAGCTATACTTGAAAGTAAAATTTGGGAACTGTCGGAAGATGACAGTAAAATTGTTCCAGCATTAAGAGTTAGTTATCACTATCTTCCTTCACATTTAAAACGATGTTTTGTGTTTTGCTCATTATTTCCCGAGGATTATGAATTTGACAAAGAAGAAATAGTTTTGTTATGGATGGCTGAAGGTTTCTTACGACCAAAGGAAAGCAACACAATAGAAAATATTGGCTGCGAATATTTTGATGAATTAGTTGCAAGGTCATTTTTTCAACCTTCCAGTAACAATGAAAAATTATTTGTAATGCATGATCTTTTGCATGATCTAGCAACGTTTTTTGCTGGGAAATTCTATTTCAAACTCAAGGAATTTGACAATCGACACATGATAGAAAACAAAACTCGTCATTTGTCATATGCTACAAAATATGAGGATAGCATCAAATTATTTCGAGAGACTTATAATGGAGCAGTACACATGAGAACCTTTTTAGATCTTTCCTTGCTTCTCAATGATCAATCAATTGATGTTGAAAGTGAGATTGGATTCTTACGACATTCACAGTGTTTAAGAGTTTTGTCATTTAAATTCTTTTTTTCAAAATCATTGCCAGATTCAATATGTGAATTGATCCATTTGCGTTATTTGAATCTCTCTCACACATATATAGTGACATTGTCCGAGTCAATATATAAATTATACAATCTTCAAATTTTGAAGTTGAGAAATTGTGCCAAACTAAAAATACTTCCCAGTAGTATGCATGATCTTGTGAACCTGCTCCACCTTGATATTCGAGGTGCTTCTGGTTTGAAAGAGATGCCGAAGAAAATGAGCAAGTTAAAGCATCTAAACTTTTTGAGTGATTATATCATTGGCAAGCATGAAGAGAATGGGATAAGAGAATTGGGAGCATTGGACAATCTTCATGGCGCATTTTGCATTTCCAACTTGGAGAACATCAAGAATAGTGATGAAGCATTGGAGGCAAAGATGGGAAACAAGAAGCACATGGACACTCTAAAATTGGAATGGCTTCCATTTGGTGACATCGATGATGTTCAAATTGAGAGAGATATACTTGACAAGTTACAACCTCATGAAAACTTGAAAGAGTTATCAATTGAAGGTTATCGGGGTGAAACATTCCCGGATTGGTTAGGCCTTTCTGACTACTCCAATATGACCAAAATGACTCTGAGTTGTTGCATGAATGGTTGTGAGCTTCCTTTGCTGGGAAACTTACCCTATTTACAGCATCTGGAGTTTTCTGAACTTAATGGGTTGGAGAAAATTGATTTTGAGGTTTACAGCAAAAACAATGCATCTTTTCAGCAGGAGACACCTTTCAAGTGTCTTGAAACTCTGAAAATTGAGAATATGCCTTGTTGGCGGGAATGGCATTTTCCTGAAGAGTTTGATGGCTTTCCTCGTCTTAAAATCCTTTCAATAATAAATTGTCGGGTGTTAAGAGGAGATCTACCTACTCAACTTCCGTCTCTAGAAGAACTTACCATTGTTAGATGTGAAGCGCTTGCATGTTCGTTGCCGAAGGCTCCCAAGCTTCACCAACTATATGTAGGGACTTCAGCATGGTTTACGAGGGTTGCGGCACCGCACAATGTAGTAATTTCAGGAACCCAGCTGGCGAGATCCGTATTGGAGTGCCTGGCCCACATCCAACAGCCACATGTCCAACGCCTGCGTATCAATGACTGTCGCTCAGCGATATCAATTTCAGCTGATTATTGGCCCGCGTCATTACAATATCTAGATATCCTTTGTTGTTCAAAATTAACATTCTCAGAGCAACTGCAACACAATTCGATATCAGAGATACGTGTAGTGGGGTGTGCGTCATTGACGTTGTTTCCATTGGGGGACTTTCCAAATCTCAAGAAACTCACAGTCCGTAAATGCCCAAGCATGGAGTGTTTTGTGGTGCCACATGCTCTTCCAATGCTCGGTTATTTAAAAATCTCAGAGTGCCCCAACTTGGTTTCCTTGCCGGATCTAGGGTTCGCTTCGCCCCAACTAGAGGAACTGCATATATTCGATTGCCCAGAAATCGATTGTTTTGCTGAGGAGTTCCTCCCGCCGAGTTTGAAAAAACTTGGAGTCACTGATTGCCAGAAACTAGCGAGGTGGATAACATCAAATGGTTTGCAAAGTGAAGGCCTTACGCATCTTTGGCTTGGTCCATGCTTTGATGTCAGGTCGTTCCCAAAAGAGGGTTGCCTTCCGGCTTCTCTTGAGTTTCTAAAATTGTGGAACTTTCCAGATATGGAGACGCTTGACTGCATGGGGCTTCACCATCTTACCTCTCTAAAAAATTTAGCAATTAGATACTGTGGGAAGCTTGAGAATATCTACATAGGGGAAGAGTGTCCTCTGAGGCGTAAGCTAGAAGAGATGGAAGACCCACGGATTCAATTCGGTTCTTACAACCTAGTTGACACCATTTTATGTGCGACGAGAGCGGTCAACAGCTTATGGGTACCCCAGAAACTCTTGCATTGGGTCTTTTGGATTTGCGCTATTTGTTGCTCATCTGACTGA 3711 0.3972 MAAKLEGGAYLSSFVDAISEKLSSLLEHDFDLELDNSAPELLQRLYDCLCDVAPVLDDAELKQLSDKRVKKWLVDLHDALYMVDDLLDELSTKAATAPPRDPGNSSPWSRFVDSCIEDSGVNVIQKIVGTLDSVVRRKGVLRLKESAKLDTSWKIPSTSLVVNSDIFGRDEDKENIIKVLLDDTCDAESHVTVIPIVGMGGIGKTTLAQLVYNDPKVVEKFDPRVWVCVAENSEPLNLTRTIIGAIDSSPCNMDSFDSLQTNLKKKLIEKTFLVVLDDVWDDRRDMWEDFLKPFRYGNNGSKILLTTRSENVASVFVASNLHYHLKLLSNEDCWSVFLKHSSISTKQYATLELIGKEIVKKCDRLPLAVKTLGGLLRNKCNKGDWKAILESKIWELSEDDSKIVPALRVSYHYLPSHLKRCFVFCSLFPEDYEFDKEEIVLLWMAEGFLRPKESNTIENIGCEYFDELVARSFFQPSSNNEKLFVMHDLLHDLATFFAGKFYFKLKEFDNRHMIENKTRHLSYATKYEDSIKLFRETYNGAVHMRTFLDLSLLLNDQSIDVESEIGFLRHSQCLRVLSFKFFFSKSLPDSICELIHLRYLNLSHTYIVTLSESIYKLYNLQILKLRNCAKLKILPSSMHDLVNLLHLDIRGASGLKEMPKKMSKLKHLNFLSDYIIGKHEENGIRELGALDNLHGAFCISNLENIKNSDEALEAKMGNKKHMDTLKLEWLPFGDIDDVQIERDILDKLQPHENLKELSIEGYRGETFPDWLGLSDYSNMTKMTLSCCMNGCELPLLGNLPYLQHLEFSELNGLEKIDFEVYSKNNASFQQETPFKCLETLKIENMPCWREWHFPEEFDGFPRLKILSIINCRVLRGDLPTQLPSLEELTIVRCEALACSLPKAPKLHQLYVGTSAWFTRVAAPHNVVISGTQLARSVLECLAHIQQPHVQRLRINDCRSAISISADYWPASLQYLDILCCSKLTFSEQLQHNSISEIRVVGCASLTLFPLGDFPNLKKLTVRKCPSMECFVVPHALPMLGYLKISECPNLVSLPDLGFASPQLEELHIFDCPEIDCFAEEFLPPSLKKLGVTDCQKLARWITSNGLQSEGLTHLWLGPCFDVRSFPKEGCLPASLEFLKLWNFPDMETLDCMGLHHLTSLKNLAIRYCGKLENIYIGEECPLRRKLEEMEDPRIQFGSYNLVDTILCATRAVNSLWVPQKLLHWVFWICAICCSSD 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182851g00003 1236 FunFam Probable disease resistance protein At1g61300 152 320 - -
Stsc182851g00003 1236 Pfam NB-ARC domain 170 393 IPR002182 GO:0043531
Stsc182851g00003 1236 Gene3D - 327 409 IPR042197 -
Stsc182851g00003 1236 Gene3D Ribonuclease Inhibitor 541 918 IPR032675 -
Stsc182851g00003 1236 Gene3D - 150 319 IPR027417 -
Stsc182851g00003 1236 FunFam Probable disease resistance protein At1g63360 411 496 - -
Stsc182851g00003 1236 PANTHER DISEASE RESISTANCE PROTEIN RP 72 894 IPR044974 GO:0006952
Stsc182851g00003 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 425 IPR027417 -
Stsc182851g00003 1236 Gene3D - 15 120 - -
Stsc182851g00003 1236 SUPERFAMILY L domain-like 485 901 - -
Stsc182851g00003 1236 Pfam Rx N-terminal domain 14 98 IPR041118 -
Stsc182851g00003 1236 Gene3D Ribonuclease Inhibitor 924 1181 IPR032675 -
Stsc182851g00003 1236 SUPERFAMILY RNI-like 838 1171 - -
Stsc182851g00003 1236 Gene3D - 410 495 IPR036388 -
Stsc182851g00003 1236 PRINTS Disease resistance protein signature 266 280 - -
Stsc182851g00003 1236 PRINTS Disease resistance protein signature 193 208 - -
Stsc182851g00003 1236 PRINTS Disease resistance protein signature 362 376 - -
Stsc182851g00003 1236 PRINTS Disease resistance protein signature 615 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182851g00003 Stsc-Chr182851 8530 12542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182851g00003 191 703 WRKY Transcription Factor Family AT5G45050 21.528 4.87e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182851g00003 - - ahf:112708719 1639.01