Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182832g00001 ATGGGTTCACAAGGTGGGGCAATACAAGAGGCGAAGAGTGGTGGCTCTGGCTCCTTGGCAAGACAAGGGTCATTGTATAATCTCACACTTGATGAGGTTCAAAACCAGCTTGGAAATTTGGGGAAGCCATTAGGAAGCATGAATCTTGATGAGCTTCTAAAGAGTGTGTTTACTGCTGAGGCTGGTGGTCAAGCCTCTTCTGGATTGGGTTCTGGGACTGATGCTAACATTCAGCAGCAGCAGCAGCATGCTCAGTTAGCTTCTGTTTCATCCCTGAATCCACAAGGGAGCCTAACTATTTCTGGGGATCTTAGCAAGAAAACCATTGATGAGGTTTGGAGAGATATGCAGAAGAAAAAGAGTGGTGGTAACAGTGACAGTGATGACAGCAAAACTCAGGAGACACAGCCGACATTCGGCGAGATGACTCTGGAGGATTTCTTGGTGAAAGCAGGAGTGGTTGCTGAGTCTTTTGCTACTGAGGATAATGCTATGTCAAGGGTTGATTCAAATGTGGCTACTCAGCGAAGTGTTTCTGAGCATGCACACTGGATTCAATACCAAATTCCTTCGGTGCAGCCGGCACCTCATCTCCGCCATAATCAACATCAGAAGCAGCAGAATGATATGATTGCTGGTTTTATCTCTGGTCCTGTGGCTCAGCAGCCTTTTCCTGTTGTGGTTAATCCTGTTTTGGATGCTGGATACACTGAGACATTGGTGACTATGTCACCATCTTCTTTGATGGGCACATTATCAGATTCCCAGACTCCGGGTCGGAAAAGGGTTGCCTCTGGTAATGTGGTTGAGAAAACTGTTGAGAGGAGACAGAAGAGGATGATAAAGAATAGGGAATCTGCTGCGCGGTCGCGTGCTAGAAAACAGGCTTACACACAAGAACTGGAGAACAAAGTTTCCCGTTTAGAAGAAGAGAATGAAAGGCTTAGAAGACAGCATGAGATAGAGAAGGTGTTGCCAAGTGTGCCGCCACCGGATCCAAAGCATCAACTTCGCCGGACGAGTTCGGGACCCCTTTGA 1038 0.4721 MGSQGGAIQEAKSGGSGSLARQGSLYNLTLDEVQNQLGNLGKPLGSMNLDELLKSVFTAEAGGQASSGLGSGTDANIQQQQQHAQLASVSSLNPQGSLTISGDLSKKTIDEVWRDMQKKKSGGNSDSDDSKTQETQPTFGEMTLEDFLVKAGVVAESFATEDNAMSRVDSNVATQRSVSEHAHWIQYQIPSVQPAPHLRHNQHQKQQNDMIAGFISGPVAQQPFPVVVNPVLDAGYTETLVTMSPSSLMGTLSDSQTPGRKRVASGNVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQHEIEKVLPSVPPPDPKHQLRRTSSGPL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182832g00001 345 MobiDBLite consensus disorder prediction 116 141 - -
Stsc182832g00001 345 Pfam bZIP transcription factor 275 318 IPR004827 GO:0003700|GO:0006355
Stsc182832g00001 345 Gene3D - 273 325 - -
Stsc182832g00001 345 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 273 318 IPR004827 GO:0003700|GO:0006355
Stsc182832g00001 345 MobiDBLite consensus disorder prediction 321 345 - -
Stsc182832g00001 345 SMART brlzneu 271 339 IPR004827 GO:0003700|GO:0006355
Stsc182832g00001 345 SUPERFAMILY Leucine zipper domain 275 320 IPR046347 GO:0003700|GO:0006355
Stsc182832g00001 345 Coils Coil 291 325 - -
Stsc182832g00001 345 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 273 325 - -
Stsc182832g00001 345 MobiDBLite consensus disorder prediction 65 90 - -
Stsc182832g00001 345 MobiDBLite consensus disorder prediction 249 298 - -
Stsc182832g00001 345 CDD bZIP_plant_BZIP46 275 320 - -
Stsc182832g00001 345 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 278 293 IPR004827 GO:0003700|GO:0006355
Stsc182832g00001 345 MobiDBLite consensus disorder prediction 267 298 - -
Stsc182832g00001 345 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 19 344 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182832g00001 Stsc-Chr182832 6696 10199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182832g00001 1 345 bZIP Transcription Factor Family AT3G56850 53.143 3.55e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc182832g00001 bZIP_1 6.5e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182832g00001 K14432 - gmx:100783666 411.379