Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182795g00001 ATGGTTCGCTCCAATGGCGTCAGGCTACTTAACTGGGCTGCTCGTCGATCACTCTGTAACTCCAAGGATTCCGTGTATCAATCAGCGTTTCAAAGGGGCTATAGGGTTCTGAATTCAGGGCCTCGCAATCCATCCAAAACTTTTGGAAGTTTTGGTCCAGTTGGAGATGGTTTAAATTTGAAGAACTGGTTGCAACTAGGAGCTACAAATACCTATTTGGGGTCATCTAGAACAATTCATGGCTCTGCTTCATTGTCTAGAGACTATTATGATGTTCTTGGTGTGAGTAGGAATGCAAGTGCTTCTGATATAAAGAAGGCTTACTATGGGCTAGCAAAGAAGCTCCATCCAGATACAAACAAAAATGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTACTATTGCATATGAGGTATTGAGGGATGAAGAAAAGCGTCAACAGTATGATCAGGTTGGCCATGATGCCTATGTGAACCAACAGTCTGCTGGTTTTGGAGGAGGCCAGAGTGGCTTTAATCCATTTGAGCAGATATTCCGTGATCATGATTTTGTCAAGAGCTTTTTCCATCAGAATATTGGTGGCGAGGATATCAAGACTGCCATTGAATTATCCCTTATGGAAGCTGTCCAAGGGTGCACAAAAACTGTGACATTTCCAGCAGATGTTGTGTGTAATACCTGTGGTGGGACTGGTGTTCCTCCTGGTGTAAGACCTGAAACCTGTAAAAGATGTAAGGGGTCAGGGATGACATATGTACAAGCTGGCATATTTAGGATGGAGAGTACTTGTGGTACATGTAAGGGAACTGGAAAAATTGTATCGGAGTTTTGCAAGTCTTGCAGGGGCACGAAGGTTATCAGAGGAACAAGGACTGTCAAATTGGATATTATGCCGGGGATTGACACCAATGAGACCATTAGGGTTTATGGAAGTGGTGGAGCAGATCCTGATGGAGGTCAACCTGGAGATCTTTATGTTACTATTAAGGTTCGGGAAGACCCTGTTTTCCGTAGAGAAGGATCTGACATTCATGTTGATGCTGTTTTAAGTATGACTCAGGCAATTTTAGGGGGAAGCATTCAGGTTCCAACCCTTACTGGAGATGTTGTTCTTAAGGTTCGGCCTGGCACCCAACCTGGTCAAAAAGTGGTTTTGAAAAATAAAGGTAAAGCAACTACCAATCATGCAAGGAAAGTCAGATCTTTTATTTTGGAGAAGCATTGTGCAAAAATACATTCAGGAATTGCACGAGCCTATTGCTGA 1266 0.4297 MVRSNGVRLLNWAARRSLCNSKDSVYQSAFQRGYRVLNSGPRNPSKTFGSFGPVGDGLNLKNWLQLGATNTYLGSSRTIHGSASLSRDYYDVLGVSRNASASDIKKAYYGLAKKLHPDTNKNDPEAEKKFQEVTIAYEVLRDEEKRQQYDQVGHDAYVNQQSAGFGGGQSGFNPFEQIFRDHDFVKSFFHQNIGGEDIKTAIELSLMEAVQGCTKTVTFPADVVCNTCGGTGVPPGVRPETCKRCKGSGMTYVQAGIFRMESTCGTCKGTGKIVSEFCKSCRGTKVIRGTRTVKLDIMPGIDTNETIRVYGSGGADPDGGQPGDLYVTIKVREDPVFRREGSDIHVDAVLSMTQAILGGSIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGKATTNHARKVRSFILEKHCAKIHSGIARAYC 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182795g00001 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 339 IPR008971 GO:0006457|GO:0051082
Stsc182795g00001 421 Pfam DnaJ C terminal domain 198 396 IPR002939 -
Stsc182795g00001 421 Pfam DnaJ central domain 225 285 IPR001305 GO:0031072|GO:0051082
Stsc182795g00001 421 CDD DnaJ_zf 225 285 IPR001305 GO:0031072|GO:0051082
Stsc182795g00001 421 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 212 288 IPR036410 -
Stsc182795g00001 421 ProSiteProfiles Zinc finger CR-type profile. 212 290 IPR001305 GO:0031072|GO:0051082
Stsc182795g00001 421 Gene3D DnaJ domain 85 197 IPR036869 -
Stsc182795g00001 421 Hamap Chaperone protein DnaJ [dnaJ]. 85 420 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Stsc182795g00001 421 Gene3D - 333 402 - -
Stsc182795g00001 421 PRINTS DnaJ domain signature 90 108 IPR001623 -
Stsc182795g00001 421 PRINTS DnaJ domain signature 108 123 IPR001623 -
Stsc182795g00001 421 PRINTS DnaJ domain signature 125 145 IPR001623 -
Stsc182795g00001 421 PRINTS DnaJ domain signature 145 164 IPR001623 -
Stsc182795g00001 421 ProSitePatterns Nt-dnaJ domain signature. 130 149 IPR018253 -
Stsc182795g00001 421 Pfam DnaJ domain 88 150 IPR001623 -
Stsc182795g00001 421 CDD DnaJ 88 142 IPR001623 -
Stsc182795g00001 421 FunFam Chaperone protein dnaJ GFA2, mitochondrial 85 197 - -
Stsc182795g00001 421 SMART dnaj_3 87 145 IPR001623 -
Stsc182795g00001 421 Gene3D - 198 327 - -
Stsc182795g00001 421 ProSiteProfiles dnaJ domain profile. 88 153 IPR001623 -
Stsc182795g00001 421 CDD DnaJ_C 196 390 - -
Stsc182795g00001 421 Gene3D - 225 285 - -
Stsc182795g00001 421 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 50 393 - -
Stsc182795g00001 421 FunFam Molecular chaperone DnaJ 217 290 - -
Stsc182795g00001 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 336 395 IPR008971 GO:0006457|GO:0051082
Stsc182795g00001 421 SUPERFAMILY Chaperone J-domain 87 190 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182795g00001 Stsc-Chr182795 4082 10097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182795g00001 81 150 C2H2 Transcription Factor Family AT1G74250 40.000 1.69e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182795g00001 K03686 - gmx:100799735 655.595