Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182775g00001 ATGATGACAAGAAGCATTCTTTTCTCTTTGCTTTTCTTGATTTTCTCTTTTCTTTTCATCCCTACCCTCATTTCCTCTTCCCCTGTCCAAGACCCTGAATTGGTTGTAAAAGAGGTGAATAGGCAAATCAATGCCTCCATTGCTAGGAGGGGCTTATTAGCTAGTGGTAGGAGAAACTTGGGATACCTTTCATGTGGAACTGGCAATCCCATTGATGATTGTTGGAGGTGTAACCCTGATTGGGAAAAGAATAGACAAAAGTTAGCCGATTGCGCAATAGGGTTCGGAAAGAACGCAGTTGGCGGTCGTGATGGCAAGATTTACGTGGTAGACGATTCTGGAGACGATGACCCAGTAAATCCTAAACCTGGAACCCTACGTCACGCAGTGATTCAGGATGAGCCGTTGTGGATCATATTTGCTAGGGATATGGTGATCAGACTCAAAGAAGAACTAATTATGAACTCTTATAAGACAATTGATGGAAGAGGAGCAAGTGTGCACATTGCTGATGGTCCATGCATAACTATACAATATGTGACAAATGTGATTATACATGGAATTAACATACATGATTGTAAGCAAGGGGGGAATGCTATGGTGCGCGACTCTCCTAAGCACTACGGGTGGAGGACCATATCGGACGGCGATGGCGTGTCGATCTTCGGTGGGAGCCACATTTGGGTGGACCATTGTTCATTGTCCAATTGCAATGATGGGTTGATTGATGCAATTCATGGGTCCACAGCGATCACAATATCTAACAATTACATGACACACCATGATAAGGTTATGTTGTTAGGTCACAGCGATGAATACACTCAAGACAAGAACATGCAAGTCACAATTGCTTTCAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGTAGGCTTGGATACTTCCATGTGGTGAATAATGACTACACCCATTGGGAGATGTATGCTATTGGAGGAAGTGCTAACCCCACCATCAATAGCCAAGGCAATAGATTTGTTGCACCCAATGATAGATTCAGCAAAGAGGTGACAAAGCATGAAGATGCACCAGAGAGTGAATGGAAGAATTGGAATTGGAGAACAGAAGGAGATATGCTTGTAAATGGTGCATTTTTCACAGCATCTGGTGCTGCAGGAGCTTCATCAAGCTATGCTAGGGCTTCTAGCCTCAGTGCAAGACCCTCTTCTCTTGTTGCTTCTCTTACTTCCTCTTCTGGTGCCCTTATTTGCAAGAAAGGTTCTCCATGCTAG 1257 0.4383 MMTRSILFSLLFLIFSFLFIPTLISSSPVQDPELVVKEVNRQINASIARRGLLASGRRNLGYLSCGTGNPIDDCWRCNPDWEKNRQKLADCAIGFGKNAVGGRDGKIYVVDDSGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIRLKEELIMNSYKTIDGRGASVHIADGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPKHYGWRTISDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDEYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPESEWKNWNWRTEGDMLVNGAFFTASGAAGASSSYARASSLSARPSSLVASLTSSSGALICKKGSPC 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182775g00001 418 PANTHER PECTATE LYASE 18-RELATED 29 416 IPR045032 GO:0030570
Stsc182775g00001 418 SUPERFAMILY Pectin lyase-like 57 412 IPR011050 -
Stsc182775g00001 418 FunFam Pectate lyase 68 411 - -
Stsc182775g00001 418 Pfam Pectate lyase 150 334 IPR002022 -
Stsc182775g00001 418 Gene3D - 68 411 IPR012334 -
Stsc182775g00001 418 SMART amb_all 143 340 IPR002022 -
Stsc182775g00001 418 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Stsc182775g00001 418 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Stsc182775g00001 418 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Stsc182775g00001 418 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Stsc182775g00001 418 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Stsc182775g00001 418 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Stsc182775g00001 418 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Stsc182775g00001 418 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182775g00001 Stsc-Chr182775 4573 8258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182775g00001 2 418 Polysaccharide Lyase AT5G63180 76.794 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182775g00001 K01728 - gmx:100101868 714.146