Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182760g00001 ATGGATCTTGTTCCACCCTCTGAGCACCTCTGCTATGTTCGTTGCAACTTCTGCAACACTGTGCTTGCGGTTGGGATACCATGCAAGAGGCTGCTAGACACAGTGACAGTGAAGTGTGGTCACTGCAGCAACCTATCGTTTCTCAGCACCAGGCCACCTCCTCCATCTCCTTTCTCTCACAACCATCAATCCACCGCCATTGACCACACCCTCACTCTCCAG 222 0.527 MDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPPPSPFSHNHQSTAIDHTLTLQ 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182760g00001 74 PANTHER PROTEIN YABBY 6-RELATED 6 62 IPR006780 GO:0007275
Stsc182760g00001 74 MobiDBLite consensus disorder prediction 53 74 - -
Stsc182760g00001 74 MobiDBLite consensus disorder prediction 60 74 - -
Stsc182760g00001 74 Pfam YABBY protein 6 67 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182760g00001 Stsc-Chr182760 9962 10314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182760g00001 5 53 C2C2-YABBY Transcription Factor Family AT1G69180 77.551 6.01e-24 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc182760g00001 YABBY 2.2e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182760g00001 K25796 - gmx:100819079 129.413