Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182753g00002 ATGGCAGGGGTACCAACGACGCTGGAGGAAGTTCGAACACTATGGATTGGGGACCTTCAGTACTGGGTTGACGAATCATACCTCACACAGTGCTTCGCCCACACCGGCGAAGTTGTTTCCATCAAGATCATCCGCAACAAGCTCACCGGCCACCCCGAGGGCTACGGTTTTGTCGAGTTCCTCTCCCACGCCGCCGCCGAGCGCGTCCTCCACTCCTACAACGGCACTCCCATGCCCGGAACTGACCACAACTTCCGCCTAAACTGGGCTTCTTTCGGCGTCGGCGACCGCAGGCCCGACGCCGGCCCCGACCACTCCATCTTCGTCGGCGACCTCGCCCCTGACGTCACCGATTATCTCCTCCAGGAGACTTTCCGCGCGAATTATCCTTCCGTTAGAGGTGCGAAGGTGGTTACGGACCCTAACACGGGTCGATCCAAGGGTTACGGGTTCGTTAAATTCGCGGATGAGAACGAGAGGAACCGTGCAATGACGGAGATGAATGGAGTTTATTGCTCCACGAGGCCCATGCGTATTAGCGCTGCTACACCCAAGAAAACCACCGCCTTTCAACAGCAGTATGCTCCAGCTAAAGCAATGTATCCAGTCCCCGCGTATACTGCTGCTCCGGTTCCCCCAGAATATGATATGAATAATACCACTGTTTATGTTGGTAATTTGGATCTTAATGTCACGGAGGAGGAGCTGAAGCAAGCCTTTATGCAATTTGGGGATATTGTGTCTGTCAAACTTCATGCTGGCAAAGGATTTGGTTTTGTTCAATTTGGGACTAGGCAGTAA 801 0.5381 MAGVPTTLEEVRTLWIGDLQYWVDESYLTQCFAHTGEVVSIKIIRNKLTGHPEGYGFVEFLSHAAAERVLHSYNGTPMPGTDHNFRLNWASFGVGDRRPDAGPDHSIFVGDLAPDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMNGVYCSTRPMRISAATPKKTTAFQQQYAPAKAMYPVPAYTAAPVPPEYDMNNTTVYVGNLDLNVTEEELKQAFMQFGDIVSVKLHAGKGFGFVQFGTRQ 266
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc182753g00002 266 FunFam Polyadenylate-binding protein RBP47B 11 91 - -
Stsc182753g00002 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 184 IPR000504 GO:0003723
Stsc182753g00002 266 SUPERFAMILY RNA-binding domain, RBD 201 265 IPR035979 GO:0003676
Stsc182753g00002 266 SUPERFAMILY RNA-binding domain, RBD 7 80 IPR035979 GO:0003676
Stsc182753g00002 266 CDD RRM2_SECp43_like 104 183 - -
Stsc182753g00002 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 263 IPR000504 GO:0003723
Stsc182753g00002 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 172 IPR000504 GO:0003723
Stsc182753g00002 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 80 IPR000504 GO:0003723
Stsc182753g00002 266 Gene3D - 94 193 IPR012677 -
Stsc182753g00002 266 SMART rrm1_1 106 180 IPR000504 GO:0003723
Stsc182753g00002 266 SMART rrm1_1 221 266 IPR000504 GO:0003723
Stsc182753g00002 266 SMART rrm1_1 13 88 IPR000504 GO:0003723
Stsc182753g00002 266 CDD RRM1_SECp43_like 13 93 - -
Stsc182753g00002 266 Gene3D - 208 266 IPR012677 -
Stsc182753g00002 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 266 IPR000504 GO:0003723
Stsc182753g00002 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 92 IPR000504 GO:0003723
Stsc182753g00002 266 Gene3D - 11 91 IPR012677 -
Stsc182753g00002 266 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 265 - -
Stsc182753g00002 266 FunFam Polyadenylate-binding protein RBP47B 93 195 - -
Stsc182753g00002 266 SUPERFAMILY RNA-binding domain, RBD 89 193 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc182753g00002 Stsc-Chr182753 755 2345 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182753g00002 14 264 Eukaryotic Initiation Factors Gene Family AT4G34110 26.894 2.76e-19 85.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182753g00002 - - zju:107412589 453.366