Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182753g00001 ATGGCAGGGGTACCAACGACGCTGGAGGAAGTTCGAACACTATGGATTGGGGACCTTCAGTACTGGGTTGACGAATCATACCTCACACAGTGCTTCGCCCACACCGGCGAAGTTGTTTCCATCAAGATCATCCGCAACAAGCTCACCGGCCACCCCGAGGGCTACGGTTTTGTCGAGTTCCTCTCCCACGCCGCCGCCGAGCGCGTCCTCCACTCCTACAACGGCACTCCCATGCCCGGAACTGACCACAACTTCCGCCTAAACTGGGCTTCTTTCGGCGTCGGCGACCGCAGGCCCGACGCCGGCCCCGACCACTCCATCTTCGTCGGCGACCTCGCCCCTGACGTCACCGATTATCTCCTCCAGGAGACTTTCCGCGCGAATTATCCTTCCGTTAGAGGTGCGAAGGTGGTTACGGACCCTAACACGGGTCGATCCAAGGGTTACGGGTTCGTTAAATTCGCGGATGAGAACGAGAGGAACCGTGCAATGACGGAGATGAATGGAGTTTATTGCTCCACGAGGCCCATGCGTATTAGCGCTGCTACACCCAAGAAAACCACCGCCTTTCAACAGCAGTATGCTCCAGCTAAAGCAATGTATCCAGTCCCCGCGTATACTGCTGCTCCGGTTCCCCCAGAATATGATATGAATAATACCACTGTTTATGTTGGTAATTTGGATCTTAATGTCACGGAGGAGGAGCTGAAGCAAGCCTTTATGCAATTTGGGGATATTGTGTCTGTCAAACTTCATGCTGGCAAAGGATTTGGTTTTGTTCAATTTGGGACTAGAGCTTCTGCTGAAGAATCCATTCAGAAGTTGCAGGGGAAGGTGTTAGGTCAACAAGCGGTTCAACTTTCTTGGGCTAGTACAGCCAGACAGG 886 0.5339 MAGVPTTLEEVRTLWIGDLQYWVDESYLTQCFAHTGEVVSIKIIRNKLTGHPEGYGFVEFLSHAAAERVLHSYNGTPMPGTDHNFRLNWASFGVGDRRPDAGPDHSIFVGDLAPDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMNGVYCSTRPMRISAATPKKTTAFQQQYAPAKAMYPVPAYTAAPVPPEYDMNNTTVYVGNLDLNVTEEELKQAFMQFGDIVSVKLHAGKGFGFVQFGTRASAEESIQKLQGKVLGQQAVQLSWASTARQ 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182753g00001 295 FunFam polyadenylate-binding protein RBP45 205 295 - -
Stsc182753g00001 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 184 IPR000504 GO:0003723
Stsc182753g00001 295 SUPERFAMILY RNA-binding domain, RBD 103 290 IPR035979 GO:0003676
Stsc182753g00001 295 FunFam Polyadenylate-binding protein RBP47B 93 195 - -
Stsc182753g00001 295 CDD RRM2_SECp43_like 104 183 - -
Stsc182753g00001 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 292 IPR000504 GO:0003723
Stsc182753g00001 295 CDD RRM1_SECp43_like 13 93 - -
Stsc182753g00001 295 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 292 - -
Stsc182753g00001 295 Gene3D - 208 295 IPR012677 -
Stsc182753g00001 295 Gene3D - 94 195 IPR012677 -
Stsc182753g00001 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 92 IPR000504 GO:0003723
Stsc182753g00001 295 SUPERFAMILY RNA-binding domain, RBD 7 80 IPR035979 GO:0003676
Stsc182753g00001 295 Gene3D - 11 91 IPR012677 -
Stsc182753g00001 295 SMART rrm1_1 106 180 IPR000504 GO:0003723
Stsc182753g00001 295 SMART rrm1_1 13 88 IPR000504 GO:0003723
Stsc182753g00001 295 SMART rrm1_1 221 288 IPR000504 GO:0003723
Stsc182753g00001 295 FunFam Polyadenylate-binding protein RBP47B 11 91 - -
Stsc182753g00001 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 172 IPR000504 GO:0003723
Stsc182753g00001 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 285 IPR000504 GO:0003723
Stsc182753g00001 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182753g00001 Stsc-Chr182753 755 2345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182753g00001 14 290 Eukaryotic Initiation Factors Gene Family AT4G34110 26.552 2.87e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182753g00001 - - qsa:O6P43_000140 491.115