Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182745g00002 ATGGATAATAACAACTTACTATGTGAAACTTTCTTGGACACAACAGAGTTTGGTGCAGAGGATCTCTTTTCCATTTTAGAGAACCTTGAAGACTTCAGCAATAATAATGGTTCGTCGATAACCACCACCACCACTACAAACCAAAGTGCTTCACAAGATGAGACTTCACCGAAGAGGAAGAGACAAAAGGTTATTGAAGCATCTGAAGAAAATAATAATAATAATAATAATAAAAATGATGATGATGATGATGATGATGGAGAAGAAGAAAGGGTATTATCGTCCCATATAACTGTTGAGCGCAACCGAAGAAAGCAAATGAATGAGCACTTGTCTGTCTTGAGATCACTTATGCCTTCTTTTTATGTCAAACGAGGAGATCAAGCATCAATAATTGGAGGTGTAGTTGATTACATCAACGAATTGCAACAACTTCTTCAATGCCTTGAGGCCAAGAAACACAGAAAAGTAGTTTACAATGATAATAATAACAATAATGTACTAAGCCCAAGATTAATTATTCCAAGCCCAATACTCCCTTCATCCCTAAGCCCACGAAAACCGCCAATAAGCCCAATAAGACCGCCAATAAGCCCTAGAATATTTAACATGCCCATTAGTCCAAGAACTCCACAACCTGGAAGCCCATGGCTACAAGCCGGTGGCGGTGGTTACCTTTCACCAACTACCATTTCCAACAACTCTTCTTCCATTGAGCCTTCTCCTTCTCCTTCTTCCGGTGGATCTTCCATTATTAACGATAATGTGAATGATCTGGTTGTGAATTCGAAGTCGGCGATGGCTGACGTGGAGGTGAAGTTTTCCGGGAAGCATGTTTTGCTGAAAACTGTGTCTTCAAGAATTCCTGGGCAAGCAATGAGGATAGTATCAGCACTAGAAGACCTTGCTCTTGAGATCCTTCATGTTAGTATTAGTACTGCTCATGAAACCATGCTAAACTCTTTCACTATTAAGGTTGATGTTAAATCGTCAGTGGACTGCCTTGTTAGAGGACATCGAATTCCATCATGTAAGCAAGTTAGTGGAACTAAACGAGCACTACCCGTCGGTTTCGATACTAGTTGA 1086 0.4024 MDNNNLLCETFLDTTEFGAEDLFSILENLEDFSNNNGSSITTTTTTNQSASQDETSPKRKRQKVIEASEENNNNNNNKNDDDDDDDGEEERVLSSHITVERNRRKQMNEHLSVLRSLMPSFYVKRGDQASIIGGVVDYINELQQLLQCLEAKKHRKVVYNDNNNNNVLSPRLIIPSPILPSSLSPRKPPISPIRPPISPRIFNMPISPRTPQPGSPWLQAGGGGYLSPTTISNNSSSIEPSPSPSSGGSSIINDNVNDLVVNSKSAMADVEVKFSGKHVLLKTVSSRIPGQAMRIVSALEDLALEILHVSISTAHETMLNSFTIKVDVKSSVDCLVRGHRIPSCKQVSGTKRALPVGFDTS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182745g00002 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 154 IPR036638 GO:0046983
Stsc182745g00002 361 MobiDBLite consensus disorder prediction 33 91 - -
Stsc182745g00002 361 MobiDBLite consensus disorder prediction 229 251 - -
Stsc182745g00002 361 Gene3D - 79 157 IPR036638 GO:0046983
Stsc182745g00002 361 SMART finulus 97 148 IPR011598 GO:0046983
Stsc182745g00002 361 MobiDBLite consensus disorder prediction 33 53 - -
Stsc182745g00002 361 Pfam Helix-loop-helix DNA-binding domain 95 143 IPR011598 GO:0046983
Stsc182745g00002 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Stsc182745g00002 361 PANTHER TRANSCRIPTION FACTOR FAMA 11 331 IPR044283 GO:0003700|GO:0010052
Stsc182745g00002 361 CDD bHLH_AtFAMA_like 95 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182745g00002 Stsc-Chr182745 4144 10687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182745g00002 8 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 48.159 1.14e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc182745g00002 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182745g00002 K20558 - gmx:100809717 265.774