Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182735g00002 ATGGAGGAAATCCAGAAAGCCACAAGAAACTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGTACAGTTTACAAGGCCAAACTCTTGGATGGAAAGGTGGTCGCAGTAAAGCGCGCAAAGAAGAGTCTATATGAGAAGCATTTGGGTGTGGAGTTCCAGAGTGAGATACAAACACTATCAAGGGTTGAACATTTGAACTTGGTCAAATTCTATGGCTATTTGGAGCAAGGGGATGAAAGAATTGTTGTTGTGGAGTATGTTCCAAATGGAAACCTAAGAGAACATTTGGATTGCATTCATGGAAAATTTCTTGACCTTCCTACGCGTCTAGACATTGCAATTGATGTAGCTCATGCCATCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAATCTTCCAACATTCTCCTCTCCGAAAATTTTCGAGCTAAGGTAGCAGATTTTGGTTTTGCAAAACAAGCACCGGATAGTGACTCCGGCATGACTCATGTATCCACCCAAGTTAAAGGAACAGCAGGCTACTTGGACCCTGAATACCTGAAAACATATCAACTAACTGAAAAGAGTGATGTGTATTCATTTGGGGTTATGCTTGTTGAACTCATCACAGGAAGACGTCCCATAGAACCTAAATTCGAACTCAGAGAGCGAGTAACTGCAAAATGGGCTATGAAGAAATTTGTTGATGGAGAAGCTACCACTGTCTTGGATCCAAGACTTGATCAAACTGCAGCAAATACACTTGCCCTTGAAAAGATTCTTGAACTAGCATTGCAGTGTTTGGCACCTAGGAGACAAAACAGGCCTAACATGAAGAGATGCGCCGAGATCCTTTGGACGATCCGCAAGGATTACAGGGAGCTATCAGCCTCAGACTTTCGCTCACTTTCTTCTGCTTCTACCCAGAGAAGCTCTTCAATAAGAGAGTGA 954 0.4224 MEEIQKATRNFSPSFKIGQGGFGTVYKAKLLDGKVVAVKRAKKSLYEKHLGVEFQSEIQTLSRVEHLNLVKFYGYLEQGDERIVVVEYVPNGNLREHLDCIHGKFLDLPTRLDIAIDVAHAITYLHMYIDHPIIHRDIKSSNILLSENFRAKVADFGFAKQAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVMLVELITGRRPIEPKFELRERVTAKWAMKKFVDGEATTVLDPRLDQTAANTLALEKILELALQCLAPRRQNRPNMKRCAEILWTIRKDYRELSASDFRSLSSASTQRSSSIRE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182735g00002 317 CDD STKc_IRAK 17 286 - -
Stsc182735g00002 317 PIRSF ILK 2 299 - -
Stsc182735g00002 317 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 1 88 - -
Stsc182735g00002 317 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 89 300 - -
Stsc182735g00002 317 SMART serkin_6 11 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182735g00002 317 Pfam Protein kinase domain 16 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182735g00002 317 PANTHER OS01G0750732 PROTEIN 2 303 - -
Stsc182735g00002 317 SUPERFAMILY Protein kinase-like (PK-like) 3 290 IPR011009 -
Stsc182735g00002 317 Gene3D Transferase(Phosphotransferase) domain 1 89 310 - -
Stsc182735g00002 317 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Stsc182735g00002 317 ProSiteProfiles Protein kinase domain profile. 11 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182735g00002 317 ProSitePatterns Protein kinases ATP-binding region signature. 17 43 IPR017441 GO:0005524
Stsc182735g00002 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182735g00002 Stsc-Chr182735 971 2905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182735g00002 2 279 Receptor kinase-like Gene Family AT1G79620 47.872 1.42e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Stsc182735g00002 Pkinase 5.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182735g00002 - - gmx:100792034 536.569