Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182735g00001 ATGAAAGGTCGCCGGAACTCTAGCTCCGACTACCGGAGCACGCCGGACCGCGGTGGATACTCTCCCGGATACGCCTCTTCCGAGGTCAGCGCCAAGTCAACTTCTTCTTCCATCGCCTCCCGGAGTTCGGTCTCCTCCGCCGCTAGGTCTGTAGCCGGAATCTTCACCGCCTGCTTCACGCCGCCGGAAGCCACCAGCAGAAGCTCCAAGAGCTTCGGGGATTCTGAGGAGTTCAAAGCTCCATCTGTTGCATCGGATGTTTCAAGAGCTAGTAGTCAGAGAGGGCGCGGTTCGAATCGAGGCATCAACATCAGCACAAATAAAGAGCCTGGCACTGTAAAATTCACCATGGAGGAAATCCAGAAAGCCACAAGAAACTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGTACAGTTTACAAGGCCAAACTCTTGGATGGAAAGGTGGTCGCAGTAAAGCGCGCAAAGAAGAGTCTATATGAGAAGCATTTGGGTGTGGAGTTCCAGAGTGAGATACAAACACTATCAAGGGTTGAACATTTGAACTTGGTCAAATTCTATGGCTATTTGGAGCAAGGGGATGAAAGAATTGTTGTTGTGGAGTATGTTCCAAATGGAAACCTAAGAGAACATTTGGATTGCATTCATGGAAAATTTCTTGACCTTCCTACGCGTCTAGACATTGCAATTGATGTAGCTCATGCCATCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAATCTTCCAACATTCTCCTCTCCGAAAATTTTCGAGCTAAGGTAGCAGATTTTGGTTTTGCAAAACAAGCACCGGATAGTGACTCCGGCATGACTCATGTATCCACCCAAGTTAAAGGAACAGCAGGCTACTTGGACCCTGAATACCTGAAAACATATCAACTAACTGAAAAGAGTGATGTGTATTCATTTGGGGTTATGCTTGTTGAACTCATCACAGGAAGACGTCCCATAGAACCTAAATTCGAACTCAGAGAGCGAGTAACTGCAAAATGGGCTATGAAGAAATTTGTTGATGGAGAAGCTACCACTGTCTTGGATCCAAGACTTGATCAAACTGCAGCAAATACACTTGCCCTTGAAAAGATTCTTGAACTAGCATTGCAGTGTTTGGCACCTAGGAGACAAAACAGGCCTAACATGAAGAGATGCGCCGAGATCCTTTGGACGATCCGCAAGGATTACAGGGAGCTATCAGCCTCAGACTTTCGCTCACTTTCTTCTGCTTCTACCCAGAGAAGCTCTTCAATAAGAGAGTGA 1302 0.4616 MKGRRNSSSDYRSTPDRGGYSPGYASSEVSAKSTSSSIASRSSVSSAARSVAGIFTACFTPPEATSRSSKSFGDSEEFKAPSVASDVSRASSQRGRGSNRGINISTNKEPGTVKFTMEEIQKATRNFSPSFKIGQGGFGTVYKAKLLDGKVVAVKRAKKSLYEKHLGVEFQSEIQTLSRVEHLNLVKFYGYLEQGDERIVVVEYVPNGNLREHLDCIHGKFLDLPTRLDIAIDVAHAITYLHMYIDHPIIHRDIKSSNILLSENFRAKVADFGFAKQAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVMLVELITGRRPIEPKFELRERVTAKWAMKKFVDGEATTVLDPRLDQTAANTLALEKILELALQCLAPRRQNRPNMKRCAEILWTIRKDYRELSASDFRSLSSASTQRSSSIRE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182735g00001 433 MobiDBLite consensus disorder prediction 83 108 - -
Stsc182735g00001 433 MobiDBLite consensus disorder prediction 26 43 - -
Stsc182735g00001 433 ProSiteProfiles Protein kinase domain profile. 127 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182735g00001 433 Gene3D Phosphorylase Kinase; domain 1 87 204 - -
Stsc182735g00001 433 MobiDBLite consensus disorder prediction 1 43 - -
Stsc182735g00001 433 CDD STKc_IRAK 133 402 - -
Stsc182735g00001 433 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 205 416 - -
Stsc182735g00001 433 ProSitePatterns Protein kinases ATP-binding region signature. 133 159 IPR017441 GO:0005524
Stsc182735g00001 433 PANTHER OS01G0750732 PROTEIN 30 419 - -
Stsc182735g00001 433 SUPERFAMILY Protein kinase-like (PK-like) 103 405 IPR011009 -
Stsc182735g00001 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Stsc182735g00001 433 SMART serkin_6 127 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182735g00001 433 Pfam Protein kinase domain 132 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182735g00001 433 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 86 204 - -
Stsc182735g00001 433 Gene3D Transferase(Phosphotransferase) domain 1 205 426 - -
Stsc182735g00001 433 MobiDBLite consensus disorder prediction 85 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182735g00001 Stsc-Chr182735 971 3712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182735g00001 45 395 Receptor kinase-like Gene Family AT1G79620 42.077 3.02e-71 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Stsc182735g00001 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182735g00001 - - gmx:100792034 630.943