Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182721g00001 ATGGACCACCAGCACCGCCACGTCATCAGTGGCGGAGCCACCGATCCCATGCTCCGCACCTCCACGCTACGCACCTCTACCTTCTCCTTCCCCCTAGCTCGCTACACCACCCGCCTCATCGCTGACCGCCGCCGATTGCTTCTCGCCGACTGTGCCGACCGCCGATCCGACGACGGCTTCGACGCCGACGATGACGACGACGGAGGAGGGTGCGCGTACTCGAGGCCGGTCCTCGTGTTGGACTTGGTGTGGAACCTGGCCTTCGTCGTGGTGGCTGCCGGCGTCCTCCTCTCCACGCTCCGGGAGCGGCCGGCGACGCCGCTGAGGCTCTGGCTCTGTGGCTATTCCTTCGAGTGCGTGCTCCATATTTGCTTCGTGTTCTTCGAGTATCGCAGGAGAATCGGGGATCCTTCGCTGTCTCAGAGTCCCTACAGCATCGTGAAGAGGTTAGAGCCAGTGAACACTCTGGCATCATCTGTCTGGTGGGTGTTTGGATTTTATTGGATTGTTATGGGAGGCCAAGCACTACTGGAAGATTCTCCTAGACTTTACTGGTTAACAGTGGTGTTTCTAGCCTTTGATGTATTTTTTATCATCTTTTGCATTGGGATGGCATGTATAATATTCTTTGCTCTGTTTTGCCTGATCCCAATAATAGCATTAGCTTATGCTATAAGAATCAGGGAAGGTGCATCAGAAGAGGATATTAAGTCACTTCCTAAGTATAGGTTTGGCCAATCAAATTTGTTATTGTTGGTTGATGACAACAAGAAGCAAATTGCCAAAGCTGGATCGGATTCATACAATGAAAATCATATCAGTGAACTTTTTCTCCAACCGGATGATTCTGAATGCTGCATCTGCCTATCACCCTATGTTGATGGAGCAGAATTGTATCGCCTCCCCTGTACCCACCATTTCCATTGTGGATGCATCAGCCGCTGGCTCCGGACAAAAGCAACTTGCCCACTCTGCAAATTCAATATCCTTAGAGGTGACACGTTAGTCTAA 1011 0.5143 MDHQHRHVISGGATDPMLRTSTLRTSTFSFPLARYTTRLIADRRRLLLADCADRRSDDGFDADDDDDGGGCAYSRPVLVLDLVWNLAFVVVAAGVLLSTLRERPATPLRLWLCGYSFECVLHICFVFFEYRRRIGDPSLSQSPYSIVKRLEPVNTLASSVWWVFGFYWIVMGGQALLEDSPRLYWLTVVFLAFDVFFIIFCIGMACIIFFALFCLIPIIALAYAIRIREGASEEDIKSLPKYRFGQSNLLLLVDDNKKQIAKAGSDSYNENHISELFLQPDDSECCICLSPYVDGAELYRLPCTHHFHCGCISRWLRTKATCPLCKFNILRGDTLV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182721g00001 336 ProSiteProfiles Zinc finger RING-type profile. 285 326 IPR001841 -
Stsc182721g00001 336 Pfam Ring finger domain 284 326 IPR001841 -
Stsc182721g00001 336 SUPERFAMILY RING/U-box 277 330 - -
Stsc182721g00001 336 PANTHER TARGET OF ERK KINASE MPK-1 70 330 - -
Stsc182721g00001 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 332 IPR013083 -
Stsc182721g00001 336 SMART ring_2 285 325 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182721g00001 Stsc-Chr182721 801 4659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182721g00001 13 333 C3H Transcription Factor Family AT1G68070 43.391 8.61e-92 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182721g00001 - - gmx:100808066 481.1