Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182719g00004 ATGGGATGTGTTTTCGGCCGGTTTATGGTCGATTCTCCGCCTCGCAAACCGGTCAAGTCTAAGCGGCGTCACGGCCAACATGGGAACAGAGCTATCACCAAGAAGGGTTCAAGGAAACACCATCCTTCTTCTAAGTATGTGGTGGACATGAAAAGGGAGAGTAGGAGACAGAGTGTGAAGGAGAATAATAATAATATTAAGAATAATAATCCATCCCCAGTTGAAAAGAAGGTTTCGCGAGGTGGAAAAGAAAGTATGGTTGCTGCTACGAGAGAAGAGAAGAATATTGAAAAAGAAGATGATGATGAAGAGAAGAATATATCAAGATATGAATTCGTGGATGGATGGCCAAAGTGGTTGGTTGATAATATCCCAAGACATGTTCTTGATAGTCTTGTTCCAAAGAGTGCTGATTCCTATATAAAACTAGGAAAGGTAGGATGTGGAACGTACAGCAATGTGTACAAAGCCAAAGATAAGCGGTCTGGCAAGATTGTTGCTTTGAAGAAAGTGAGGTTTGACACATCCGATCCTGAGAGTATAAAGTTCATGGCGAGAGAAATTATGGTACTTCAGGCACTGGATCATCCGAATGTGATAAAGCTTGAAGGAATAGCAACATCAAGAATGCAATACAGTATATATTTGGTTTTTGAGTTCATGCATGCTGACCTCACCCGAATTATAGCCCGACCTGGGGAGAGACTTACTGAACCACAGATAAAGTGCTACATGCAGCAGCTGCTTTGTGGCCTCCAGCACTGTCACGAAATGGGTGTTATCCATCGAGATATTAAATCTTCAAACTTGTTAGTAGACACAAGAGGGGTGCTGAAAATTGCAGATTTTGGTCTTGCACATTCTTTCGACATCAAGTCCAACGGCCCTCTTACAAATAAAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACTAGTTATGGATTTGGAATTGATCTCTGGAGTGCTGGATGCCTATTGGCTGAAATGTTTGTTGGAAGACCGATAATGCCAGGAAGAACAGAGGCGGAACAACTACACATGATCTTCAGACTCTGTGGTTCACCTTCAGATAATTACTATAGAAAACTGAAGCTAACAAGTAGCTATCGTCCATCACAACGTTACAGACCTAATTATAAGGGAAACTTCCCGAACCTTCCTTCTTCTTTCCTTCATCTCTTGTCCACGCTTCTTGATCTTGACCCTAACCGTCGTGGTAGCGCCGCCTCTGCTCTTCGAAGTGAATTTTTCAATTCAAGTCCGTTACCCTGCGATCCTTCAGACTTACCAGCAATCTACAGTAATAATATTAATGATGAGGATGAACGAATTCATCAGAAGAGACGTAGGGTTCCAAAGGGAGGACAGGTATCTCAAGCAAGTACAAATCATGTTAGTCAATTGGGAAGGAATAACCAAACAGCTGAACAACTCAAGAAGAGGGATTCATCAGAATCATCCACCAAAGAGGATAAGAAAGAACAAGAGGAGCAGGGGCAAGAAACGAGCACTGCTAGTGCAAGCAGCACAACATCGAGCTCAAAAAATATTACGATGAACATGAATAATAACAATAGTGCATCATCAACAACATCATCAATTGTCTCTAGTAATGGCACAACTGAAGCACATCCCAGTTATGCTCTATTACACCCATCTATGATTGGAGCGATCAATCACAATAATAAGGAAGCCAATGATGAATCCCACCATCTTAAGGCTCTCTCATCAGCCTTGGATCTAAGATTTGATCCAGAGAAGCTTTCGGATCATTCTGAATAG 1797 0.4185 MGCVFGRFMVDSPPRKPVKSKRRHGQHGNRAITKKGSRKHHPSSKYVVDMKRESRRQSVKENNNNIKNNNPSPVEKKVSRGGKESMVAATREEKNIEKEDDDEEKNISRYEFVDGWPKWLVDNIPRHVLDSLVPKSADSYIKLGKVGCGTYSNVYKAKDKRSGKIVALKKVRFDTSDPESIKFMAREIMVLQALDHPNVIKLEGIATSRMQYSIYLVFEFMHADLTRIIARPGERLTEPQIKCYMQQLLCGLQHCHEMGVIHRDIKSSNLLVDTRGVLKIADFGLAHSFDIKSNGPLTNKVVTLWYRAPELLLGSTSYGFGIDLWSAGCLLAEMFVGRPIMPGRTEAEQLHMIFRLCGSPSDNYYRKLKLTSSYRPSQRYRPNYKGNFPNLPSSFLHLLSTLLDLDPNRRGSAASALRSEFFNSSPLPCDPSDLPAIYSNNINDEDERIHQKRRRVPKGGQVSQASTNHVSQLGRNNQTAEQLKKRDSSESSTKEDKKEQEEQGQETSTASASSTTSSSKNITMNMNNNNSASSTTSSIVSSNGTTEAHPSYALLHPSMIGAINHNNKEANDESHHLKALSSALDLRFDPEKLSDHSE 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182719g00004 598 FunFam Mitogen-activated protein kinase 221 440 - -
Stsc182719g00004 598 MobiDBLite consensus disorder prediction 505 544 - -
Stsc182719g00004 598 MobiDBLite consensus disorder prediction 460 479 - -
Stsc182719g00004 598 MobiDBLite consensus disorder prediction 42 60 - -
Stsc182719g00004 598 SUPERFAMILY Protein kinase-like (PK-like) 135 430 IPR011009 -
Stsc182719g00004 598 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Stsc182719g00004 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Stsc182719g00004 598 MobiDBLite consensus disorder prediction 1 104 - -
Stsc182719g00004 598 Gene3D Phosphorylase Kinase; domain 1 129 222 - -
Stsc182719g00004 598 MobiDBLite consensus disorder prediction 432 544 - -
Stsc182719g00004 598 MobiDBLite consensus disorder prediction 480 504 - -
Stsc182719g00004 598 Pfam Protein kinase domain 140 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182719g00004 598 PANTHER CELL DIVISION PROTEIN KINASE 138 428 - -
Stsc182719g00004 598 FunFam probable serine/threonine-protein kinase At1g54610 127 222 - -
Stsc182719g00004 598 MobiDBLite consensus disorder prediction 61 75 - -
Stsc182719g00004 598 SMART serkin_6 140 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182719g00004 598 Gene3D Transferase(Phosphotransferase) domain 1 223 462 - -
Stsc182719g00004 598 ProSiteProfiles Protein kinase domain profile. 140 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182719g00004 598 MobiDBLite consensus disorder prediction 17 41 - -
Stsc182719g00004 598 MobiDBLite consensus disorder prediction 77 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182719g00004 Stsc-Chr182719 8860 12382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182719g00004 135 454 Core Cell Cycle Gene Families AT5G10270 45.858 6.16e-95 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc182719g00004 Pkinase 9.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182719g00004 K08819 - gmx:102667260 560.836