Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182711g00001 ATGCCTAACAACTCCTTCTCCAATATCTTCTCCTTCACCTCCTCTTCTTCCTCTTCCTCACCACCACCACCACCTGGACCGCCGCCGCCCTTTTTCCAATTCGACCACCATTACTTCCCTTCTTCTTTACACCACCATCACCCTTATAATTACAACCACACCCTTTTCTCATCCACCACCAACACCTCCTCCACCTTTTTCCACTACCACACTACTACTACTGCTGCTGCTTCTTCTCTTACTGCAACTGCAACTACTACTGCTCCTTATTCTTCTTATTCATCTTCATCTACTTCACCTCCTTCCCCTCCTCTCAGGGAAGAACTTCCCCTTCTCACCCTCAGTCCAGCAAGACAACACCAAACACTTCTAGAACCTTCCGAAAACAATCACCTCCCCCCTCCTTCTTGCAGCACTTCCATGGATTTGGAGCTTAACGACGACGACGACGAAGACGACGATGCTGATGCTGATGCTGATGGTGGTGCTACTACTGTCACTGTTGCACTCCACATAGGGCTTCCGAGCCCTAGTGCTGCTGAGATTGCATCCGTGCTCTCCTCCTCTCCAGAGAAGGACCACGGCGAGGATTCAGGTGGTGGTGGTGGTGGTGGTTTCATGGGGAACAAAGTGAACAAAGGACAGTACTGGATCCCAACCCCATCACAGATCCTGATTGGTCCAACTCAATTCTCTTGCCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATATAGAAAAGGACCAGAATCTTTAAGGGGAACTCAACCAACAGGGATGCTAAGGTTACCATGCTATTGTTGTGCACCAGGTTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGACTTTAGAACACTCCAAACACATTACAAGAGGAAGCATGGGATTAAGCCTTTCATGTGCAGGAAATGTGGCAAGGCCTTTGCTGTTAGGGGTGATTGGAGAACCCATGAGAAGAATTGTGGCAAGCTTTGGTATTGTATCTGTGGTTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCACATTAAAGCTTTTGGTACTGGCCATGCAGCTTATGGTATTGATGGTTTTGAAGAAGATGATGATCCTGCTTCTGAAGTAGAGCAAGATCATGAATCCACCCAATAA 1179 0.4724 MPNNSFSNIFSFTSSSSSSSPPPPPGPPPPFFQFDHHYFPSSLHHHHPYNYNHTLFSSTTNTSSTFFHYHTTTTAAASSLTATATTTAPYSSYSSSSTSPPSPPLREELPLLTLSPARQHQTLLEPSENNHLPPPSCSTSMDLELNDDDDEDDDADADADGGATTVTVALHIGLPSPSAAEIASVLSSSPEKDHGEDSGGGGGGGFMGNKVNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGTGHAAYGIDGFEEDDDPASEVEQDHESTQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182711g00001 392 MobiDBLite consensus disorder prediction 124 161 - -
Stsc182711g00001 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 258 IPR013087 -
Stsc182711g00001 392 MobiDBLite consensus disorder prediction 12 32 - -
Stsc182711g00001 392 PANTHER ZINC FINGER PROTEIN WIP2 68 389 IPR043584 GO:0003700|GO:0010468
Stsc182711g00001 392 MobiDBLite consensus disorder prediction 18 32 - -
Stsc182711g00001 392 ProSitePatterns Zinc finger C2H2 type domain signature. 233 253 IPR013087 -
Stsc182711g00001 392 MobiDBLite consensus disorder prediction 88 108 - -
Stsc182711g00001 392 MobiDBLite consensus disorder prediction 124 142 - -
Stsc182711g00001 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 315 335 IPR013087 -
Stsc182711g00001 392 SUPERFAMILY beta-beta-alpha zinc fingers 296 335 IPR036236 -
Stsc182711g00001 392 Gene3D Classic Zinc Finger 230 253 - -
Stsc182711g00001 392 FunFam Zinc finger protein WIP2 284 366 - -
Stsc182711g00001 392 MobiDBLite consensus disorder prediction 181 206 - -
Stsc182711g00001 392 Gene3D Classic Zinc Finger 292 368 - -
Stsc182711g00001 392 MobiDBLite consensus disorder prediction 143 159 - -
Stsc182711g00001 392 SMART c2h2final6 315 335 IPR013087 -
Stsc182711g00001 392 SMART c2h2final6 231 253 IPR013087 -
Stsc182711g00001 392 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182711g00001 Stsc-Chr182711 3526 5920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182711g00001 105 392 C2H2 Transcription Factor Family AT3G57670 69.159 2.42e-144 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc182711g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182711g00001 - - pvy:116116361 458.373