Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182677g00001 ATGGCCAAACCAGGGCGAGGCCGTCGCTCTCCGCCCTCGGGCTCCGGTTCCGCCTCCTCCTCCCGTTCCCGTTCCTCTTCCCCTTCCGATTCTCGCTCTTCCTCCCGCTCTCGCTCCCTCTCTCGATCCCGTTCTCCCTCTCGCTCCAGATCCTTCTCTTCCTCCTCCTCCTCCCCCTCTCGCTCCTCCCGAAGCCGCAGCCGCAGCCCTCCCCCTCAGCGCCGGAGAAGTCCCCCTGATGCAGCCAGAAGAGGTCGATCTCCTCCACCTCAGTCTAGAAAAGCTTCTCCTCCTCCAAGGAAACCTTCTCCTGTACGTGAATCACTTGTTCTTCATGTAGAAAAGCTCAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATTTTCAGTAACTTCGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTTAATCTTCCAAAAGGATATGGATATGTGCAGTTCAAGACAAGAGCAGATGCTGAAAAAGCTTTATTGTACATGGATGGTGCCCAAATAGATGGGAATGTTGTTAAGGCAAGATTTACACTACCTCCTAGACAGAAAGTTCCATCACCACCAAAAGCTTCTGCTGTTGCTCCAAAGAGAGATGGCCCTAGGACTGATAATGCTAGTGCAGATGCCGAAAAGGATGGGCCAAAGCGGCCTAGAGAATCTCCTCGGAGAAAGCCTCCTCCCTCGCCACGGAGGAGATCTCCTGTGCCTCGAAGAGTTGGATCTCCAAGACGACCAGATTCTCCTCGCCGTCGTGCAGATTCTCCGATTCGTCGTCGATTGGACTCCCCTTATCGTCGTGGTGACACACCTCCTAGGAGGAGGCCTATATCCCCTGGAAGAGGCCGTTCTCCATCTCCACCAAGGCGCCTTAGATCCCCTGCAAGGGTCTCGCCTAGAAGGTTGTGGGGAAGTCCAGGTCGCAGACGTTCCCCTCCTATAAGGCGCCGTTCGCCACCACCTAGACGAGCTCGTAGTCCTCCTAGAAGGTCTCCAATAAGTCGTAGACGGAGTCGCTCACCAATACGTAGACGCTCACGCTCTAGATCATTCTCACCTCGAAGAGGTCGGCCACCTGTAAGACGTGGGAGGTCTTCATCCTATTCTGACTCGCCAAGTCCACGCAAGGTATCCCGGAGATCAAAGAGTCGCAGTCGCAGCCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGTTCACCACCCCCAATTCGCAAACCCTAG 1260 0.5452 MAKPGRGRRSPPSGSGSASSSRSRSSSPSDSRSSSRSRSLSRSRSPSRSRSFSSSSSSPSRSSRSRSRSPPPQRRRSPPDAARRGRSPPPQSRKASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTRADAEKALLYMDGAQIDGNVVKARFTLPPRQKVPSPPKASAVAPKRDGPRTDNASADAEKDGPKRPRESPRRKPPPSPRRRSPVPRRVGSPRRPDSPRRRADSPIRRRLDSPYRRGDTPPRRRPISPGRGRSPSPPRRLRSPARVSPRRLWGSPGRRRSPPIRRRSPPPRRARSPPRRSPISRRRSRSPIRRRSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSRSPRRPLRGRGSSNSSSSSSPPPIRKP 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182677g00001 419 MobiDBLite consensus disorder prediction 186 419 - -
Stsc182677g00001 419 SUPERFAMILY RNA-binding domain, RBD 96 198 IPR035979 GO:0003676
Stsc182677g00001 419 Gene3D - 8 193 IPR012677 -
Stsc182677g00001 419 MobiDBLite consensus disorder prediction 12 67 - -
Stsc182677g00001 419 MobiDBLite consensus disorder prediction 1 108 - -
Stsc182677g00001 419 MobiDBLite consensus disorder prediction 317 368 - -
Stsc182677g00001 419 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 268 387 - -
Stsc182677g00001 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Stsc182677g00001 419 SMART rrm1_1 110 183 IPR000504 GO:0003723
Stsc182677g00001 419 MobiDBLite consensus disorder prediction 399 419 - -
Stsc182677g00001 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Stsc182677g00001 419 CDD RRM_RNPS1 111 183 IPR034201 -
Stsc182677g00001 419 MobiDBLite consensus disorder prediction 209 234 - -
Stsc182677g00001 419 MobiDBLite consensus disorder prediction 250 283 - -
Stsc182677g00001 419 FunFam Serine/arginine-rich splicing factor SR45 3 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182677g00001 Stsc-Chr182677 3685 8642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182677g00001 111 184 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 5.94e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182677g00001 K14325 - gmx:100783566 251.906