Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182673g00003 ATGTTTGGGCGTGGAGCAAGAAGGAGCAGCGATAACACCAAATATTATGATGTTCTTGGTGTTTCAAAAAGCGCAAATGAAGATGAAATCAAGAAGGCCTATAGAAAAGCTGCAATGAAGAACCATCCAGATAAAGGTGGAGATCCTGAGAAGGAGCTAGGTCAAGCTTATGAAGTTTTAAGTGATCCGGAAAAGAGAGAACTGTATGATCAATATGGTGAAGATGCCCTTAAGGAAGGAATGGGAGGAGGAGGAGGAAGCTCATTTCATAACCCATTTGATATTTTTGAATCATTTTTTGGTGGAGCTGGATTTGGTGGTGGTAGCTCACGAGGTAGAAGACAAAAGCATGGTGAAGATGTCGTGCATTCTCTAAAGGTTTCCTTGGAGGATGTTTATAATGGCACAACAAAGAAACTATCTCTTTCTAGAAATATATTGTGCCCGAAGTGTAAAGGGAAGGGTTCCAAAAGTGGAAATGCTGGTACGTGTTTTGGATGCCAAGGCACAGGTATGAAGATTACAACAAGGCAGATTGGACTCGGCATGATTCAACAAATGCAACACATCTGTCCTGAATGCCGAGGAAGTGGTGAGGTCATCAACGAGAGAGATAGATGCACTCAGTGCAAGGGAAAAAAGGTCACCCAAGAAAAGAAGGTGCTTGAGGTGCATGTTGACAAGGGGATGCAACAGGGCCAGAAGATTGTGTTTGAAGGTCAAGCTGATGAAGCGCCTGATACAATCACTGGAGACATTGTTTTTGTCCTACAAGTAAAGGAGCACCCACGATTCAAAAGGGAGCATGATGACCTTTATATCGAGCACAATCTCAACTTGACAGAGGCCCTTTGTGGTTTCCAGTTTGCTGTCACCCATCTTGATGGGAGACAACTATTGATCAAGTCAAACCCTGGGGAAGTCATCAAACCAGGACAAACAAAAGCCATAAATGATGAGGGAATGCCGCAACACAATAGGCCGTTCATGAAGGGTCGTCTTTACATCAAGTTCAATGTGGATTTCCCAGACTCAGGGTTCCTTTCTCCTGACCAATGCCGTTTATTAGAGACGGTATTGCCTCAGAAGTCCAGCAAGCAGTTGACTGACATGGAGCTGGATGAGTGTGAAGAGACCACATTGCATGATGTCAACATGAAGGATGAGATGAGAAGAAAGCAGCAACAGCACTACCAGGAGGCATATGATGATGATGATGATGACCAATCCATGCCTCGAGTGCAATGTGCTCAACAGTAG 1260 0.4413 MFGRGARRSSDNTKYYDVLGVSKSANEDEIKKAYRKAAMKNHPDKGGDPEKELGQAYEVLSDPEKRELYDQYGEDALKEGMGGGGGSSFHNPFDIFESFFGGAGFGGGSSRGRRQKHGEDVVHSLKVSLEDVYNGTTKKLSLSRNILCPKCKGKGSKSGNAGTCFGCQGTGMKITTRQIGLGMIQQMQHICPECRGSGEVINERDRCTQCKGKKVTQEKKVLEVHVDKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKEHPRFKREHDDLYIEHNLNLTEALCGFQFAVTHLDGRQLLIKSNPGEVIKPGQTKAINDEGMPQHNRPFMKGRLYIKFNVDFPDSGFLSPDQCRLLETVLPQKSSKQLTDMELDECEETTLHDVNMKDEMRRKQQQHYQEAYDDDDDDQSMPRVQCAQQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182673g00003 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 263 IPR008971 GO:0006457|GO:0051082
Stsc182673g00003 419 Gene3D - 148 214 - -
Stsc182673g00003 419 SUPERFAMILY Chaperone J-domain 10 108 IPR036869 -
Stsc182673g00003 419 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 400 IPR044713 GO:0006457|GO:0030544
Stsc182673g00003 419 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Stsc182673g00003 419 CDD DnaJ 15 62 IPR001623 -
Stsc182673g00003 419 PRINTS DnaJ domain signature 45 65 IPR001623 -
Stsc182673g00003 419 PRINTS DnaJ domain signature 65 84 IPR001623 -
Stsc182673g00003 419 PRINTS DnaJ domain signature 16 34 IPR001623 -
Stsc182673g00003 419 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Stsc182673g00003 419 Gene3D DnaJ domain 11 110 IPR036869 -
Stsc182673g00003 419 CDD DnaJ_C 119 345 - -
Stsc182673g00003 419 Gene3D - 111 262 - -
Stsc182673g00003 419 ProSiteProfiles dnaJ domain profile. 14 73 IPR001623 -
Stsc182673g00003 419 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Stsc182673g00003 419 Pfam DnaJ domain 14 70 IPR001623 -
Stsc182673g00003 419 SMART dnaj_3 13 65 IPR001623 -
Stsc182673g00003 419 MobiDBLite consensus disorder prediction 381 400 - -
Stsc182673g00003 419 Gene3D - 263 344 - -
Stsc182673g00003 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 345 IPR008971 GO:0006457|GO:0051082
Stsc182673g00003 419 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Stsc182673g00003 419 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Stsc182673g00003 419 MobiDBLite consensus disorder prediction 381 419 - -
Stsc182673g00003 419 FunFam DnaJ subfamily A member 2 148 214 - -
Stsc182673g00003 419 FunFam DnaJ subfamily A member 2 262 344 - -
Stsc182673g00003 419 Hamap Chaperone protein DnaJ [dnaJ]. 11 389 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182673g00003 Stsc-Chr182673 3576 7228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182673g00003 15 72 C2H2 Transcription Factor Family AT1G74250 44.928 7.18e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182673g00003 K09503 - gmx:100800590 696.427