Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182667g00001 ATGGGAAGACCACCTTGTTGTGATAAAGAAGGTGTGAAGAAAGGGTTATCAAGATGTAGCAAGAGTTGTAGGCTTAGATGGACTAATTACTTGAGACCTGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAAAAGATGATTATCCATCTTCAAGATCTCTTAGGAAACAGATGGGCTGCAATTGCTTCATACCTACCACAAAGGACTGACAATGATATCAAGAATTATTGGAACACGCATCTGAAGAAGAAGCTCAAGAAGTTGCAAACTCCGGGTTCTGGAGTTTGCAACTTCGGAGAAGCCGGAACCGGGTACTCAGCTTCGAGCCCGGCTCGCGGCCAGTGGGAGAGAAGGCTCCAAACTGATATCCACATGGCGAAAAGGGCCCTCAGCGAAGCCCTTTCGCCGGAGAACAATAACAATAATAACAACAACAATAAGCTTTCTTCTTGCTTCTTCTCGTCGTCGTCATCAATTTCTTCAAAATGTGAGAGCTCATCAATAACAGACACAAAGGCAACACAATCAAGTTTATGCTATGCTTCAAGTGCTGAGAACATAGCTCGTTTGTTGAAGGGTTGGATGAAGAATCCAGCAACAAATAATAACAACAACAAGTCCTCATCATCAAGAACCCAGAATAGTTTCTTTGTTGACACTGCTTGTAGTGAAGAAGGTGCAAAGGGAGAAGGAGGAGGAAGAGGAAGTAGCAGCAATGATGATAACAGTGTTGAGATGTCTGAAGCGTTTGAATCCTTGTTTGGTTTGGAGTCTTTGGATTACTCATCAAATGCTACAACCACTACTAATTCTGAGTTCTCTCATCAATCTTTGTCTCCTGATGATAATAATGTTTTCCAAGAACATGAAAGAAAGCCTGAGATTATTGCTGCTTGTGGTGGTGGTGATGATGAAATCATGCCATTCTCTTTGCTTGAGAAGTGGCTTCTTGAAGAGCTTGGTAGCCAAGACCAGAAAGTTATTAGTGGCGATGCCAAATTCTTCTAA 1011 0.4224 MGRPPCCDKEGVKKGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTPGSGVCNFGEAGTGYSASSPARGQWERRLQTDIHMAKRALSEALSPENNNNNNNNNKLSSCFFSSSSSISSKCESSSITDTKATQSSLCYASSAENIARLLKGWMKNPATNNNNNKSSSSRTQNSFFVDTACSEEGAKGEGGGRGSSSNDDNSVEMSEAFESLFGLESLDYSSNATTTTNSEFSHQSLSPDDNNVFQEHERKPEIIAACGGGDDEIMPFSLLEKWLLEELGSQDQKVISGDAKFF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182667g00001 336 Gene3D - 39 94 - -
Stsc182667g00001 336 CDD SANT 39 81 IPR001005 -
Stsc182667g00001 336 FunFam Transcription factor MYB30 38 95 - -
Stsc182667g00001 336 MobiDBLite consensus disorder prediction 266 285 - -
Stsc182667g00001 336 SMART sant 36 84 IPR001005 -
Stsc182667g00001 336 PANTHER MYB DOMAIN PROTEIN 55 14 270 - -
Stsc182667g00001 336 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Stsc182667g00001 336 MobiDBLite consensus disorder prediction 225 244 - -
Stsc182667g00001 336 ProSiteProfiles Myb-like domain profile. 32 82 IPR001005 -
Stsc182667g00001 336 SUPERFAMILY Homeodomain-like 17 89 IPR009057 -
Stsc182667g00001 336 Gene3D - 10 36 - -
Stsc182667g00001 336 MobiDBLite consensus disorder prediction 266 284 - -
Stsc182667g00001 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182667g00001 Stsc-Chr182667 7060 8421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182667g00001 1 320 MYB Transcription Factor Family AT5G62470 43.008 1.97e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc182667g00001 Myb_DNA-binding 7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182667g00001 K09422 - gmx:780543 299.671