Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182665g00002 ATGCAAAAGAGAAGGGCAGGGAGGAAGAAATTCCAAGAGACAAGGCACCCAATCTACAAAGGTGTGAGGCAAAGGAATGGAAAATGGGTTTGTGAGCTTAGGCAACCAAACAACAAAACTAGGGTTTGGCTTGGAACGTTTTCTCACCCTCACATGGCCGCCATAGCCCATGATGTCGCCGCGTTAGCCTTTCGGGGCGACAATGCTTCCCTAAACTTTCCTCAATCGGCCGCCTCACTGCCGAGGCTCGACGCTGAAACCACTTCTCTCAAAACCATCCAGTTAACCGCGACGCAGGCAGCCAACAACCACTTTCTTGAGGCCAAAGAAGAGATGAGTAGTAGTATCCTTGAAAGTAGTAGCAATAGCAATAGTAATAATAATAGTAGCAATGATGGTTTTTCTTCTTCTTCTCATGAGGAGGAATTGTGTTCGGATTATTGTAGTTTGGGAGAAGATTCTAGAAGCTTCTATTGGGATGAAGATGAAGTGTTTAACATGCCAGTGTTGATGAATAGCTTGGCTGAAGGCTTGATTATAACTCCACCGGCTTTGGAAAGAGGCTTCAATTGGGTTGGTGTAGAGACTACCATAGATTTGACTCTATGGGGTGATTGA 618 0.4531 MQKRRAGRKKFQETRHPIYKGVRQRNGKWVCELRQPNNKTRVWLGTFSHPHMAAIAHDVAALAFRGDNASLNFPQSAASLPRLDAETTSLKTIQLTATQAANNHFLEAKEEMSSSILESSSNSNSNNNSSNDGFSSSSHEEELCSDYCSLGEDSRSFYWDEDEVFNMPVLMNSLAEGLIITPPALERGFNWVGVETTIDLTLWGD 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182665g00002 205 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Stsc182665g00002 205 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Stsc182665g00002 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 2 203 IPR045277 GO:0003700
Stsc182665g00002 205 MobiDBLite consensus disorder prediction 116 137 - -
Stsc182665g00002 205 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Stsc182665g00002 205 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Stsc182665g00002 205 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Stsc182665g00002 205 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Stsc182665g00002 205 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Stsc182665g00002 205 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182665g00002 Stsc-Chr182665 13495 14112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182665g00002 3 203 AP2-EREBP Transcription Factor Family AT4G25470 43.564 7.17e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc182665g00002 AP2 3.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182665g00002 - - gmx:100778541 257.299